Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0929 ATGTCACTGGACATCACCCCCGAACGTGTATGTTATGTCCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCACCAGTCTGTTCACCATTGTGACAGTCAGATGCGGGCATTGTGCTAATTTGTTGTCTGTTAACATGGGAGCTTTGCTCCAAACAGTTCCTACTCAGGATCTCCAGTCACAGAAACAACAGCTAAGCTGTGGAGATCCAAGTGAGGATTGTGGATCATCTTCCAAATGCAACAAATTTTCTGCATTTGAGTCTGCAGAGCATGAACAGCCAAGAATGCCTCCAATACGTCCAGCCCCAGAGAAAAGACAACGAGTTCCTTCTGCATATAACAGGTTTATTAAGGAGGAAATCCAAAGGATAAAAGCTAGTAATCCAGATATTACCCACAGGGAAGCTTTTAGCACAGCAGCCAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTAAAGCTGGATGGCAACAAGCAGGGAAAGTTGGATCAGGCATTTGCAGGGGAAGGGCCACACAAGGCTCATGGATTCTATTAA 555 0.4486 MSLDITPERVCYVHCNFCNTILAVSVPCTSLFTIVTVRCGHCANLLSVNMGALLQTVPTQDLQSQKQQLSCGDPSEDCGSSSKCNKFSAFESAEHEQPRMPPIRPAPEKRQRVPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGLKLDGNKQGKLDQAFAGEGPHKAHGFY* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0929 184 FunFam axial regulator YABBY 5-like 95 154 - -
Vvi6g0929 184 Gene3D High mobility group box domain 93 153 IPR036910 -
Vvi6g0929 184 Pfam YABBY protein 6 158 IPR006780 GO:0007275
Vvi6g0929 184 PANTHER PROTEIN YABBY 6-RELATED 6 167 IPR006780 GO:0007275
Vvi6g0929 184 MobiDBLite consensus disorder prediction 90 112 - -
Vvi6g0929 184 CDD HMG-box_SF 112 148 - -
Vvi6g0929 184 MobiDBLite consensus disorder prediction 90 106 - -
Vvi6g0929 184 SUPERFAMILY HMG-box 103 151 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0929 Vvi-Chr6 11951344 11957729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0929 1 184 C2C2-YABBY Transcription Factor Family AT1G08465 66.842 1.17e-84 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vvi6g0929 YABBY 3.6e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0929 K25796 - vvi:100256505 382.489