Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0915 ATGGAGTCTCGAATGGATCAGTACGAGATCATGGAGCAGATCGGACGCGGAGCGTTCGGGGCTGCCATTCTTGTGAATCACAAATCGGAGAAGAAGAAGTATGTATTGAAGAAGATCAGGTTGGCACGACAAACGGAGAGGTGCCGGAGATCTGCTCATCAGGAGATGGCTCTAATTGCGAGAATCCAACACCCTTACATTGTTGAATTTAAGGAAGCATGGGTAGAGAAGGGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATGGCAGAATTGATGAAAAAATCGAATGGCGCCTACTTTCCTGAGGAGAAACTTTGCAAATGGTTTGCGCAATTATTATTGGCTGTCGAATATCTGCATTCAAATTATGTTCTACACCGGGATCTTAAATGTTCCAACATCTTTCTTACCAAAGATAAGGATGTCCGCCTTGGGGATTTTGGACTTGCCAAAACTTTGAAGGCTGATGACTTGGCTTCTTCAGTAGTTGGAACTCCCAATTACATGTGTCCTGAACTTCTTGCAGATATTCCTTATGGCTTCAAATCTGATATCTGGTCTCTAGGTTGCTGTATGTATGAGATGGCTGCTCATCGCCCTGCATTTAAGGCTTTTGATATGGCTGGATTAATAAGTAAAATAAACCGTTCTTCTATTGGTCCTTTGCCCTCATGCTATTCCCCTTCTTTGAAAACACTTATAAAGGGCATGCTGAGAAAGAACCCTGAGCATCGACCAAGTGCATCCGAGATTTTAAAACACCCCTATCTACAGCCTTATGTTGATCAACATCGATCATCCTTCAATCCTCCTACTGCCTATTCCTTAGAGAAGCCTATATCTACTACTCGTGATTCTCGTAAGAACATGGCTGAAAGCCAAGGCAGTAATAGTTCTGGTAGTGACAAAGATAGTTTGCTTTCAAGTGAGAAAAACATCTCAGCAATGGTTATCAACTGTGATAATAAAGCCAATGACACAGATTTGGGATCTGTTGATGATGAAGTTGGCTCTGACCAGCCCTCACCCAGTGGTGAAAATGGAGCCAACACGTGCACTGTCAAAATGGATGAACGAGAGGTAATGAAATCCTCGCATGATGAGCATGGATTAAATGCTGAATCAAAGCAACCAAAAACAATTAAAAATATTTGGATGGCTCTAAAAGAAGGAAAAGTTAGAGAAAATAGTTCTCCAATGAGAGGCAACCGTACAAAGCCTGGAGGTCAGTCAACCCAAAAAGCAAACACAGAAGCATCACTCAAAGTTCCCAAGCCCAGTATGGTCTCTCCTGGTTTCAAGTCTAATGCAGATGCTCCAACTTCAATCCCAACCAAGGCAGTCTTTGATTCTGCAAAACGGATTCAGGGTTCACATCCTTTAAAGCACCAGTTACCTATGTTTGATCCCTCTCCAAAGACTAAACCCAGACATGATGGTATTCCTCTGCCTGGTCCGTCAAAACAAGTTGTTGAAGATGGGCTTCCTGCTAAGCCTCGACAAAGAACACCCCCATCAAATGTGGTGAGGCGATCCTCATTTCCAGGGAGAATGAGGCAAGTGGGGCCTGATGTTCCAAACCAAACGAACAATATCATAAAGGTAGGTCCAAGTGAGATAACTCAAGAACCTCATAAGACTCAGTATTTGGTGCCAAATGGTCGTGCTACGCATGTATCAAGAGAAATTATACAACAGTCGCATAAGGCTCTGGTAGGAGCTTCCAAAGGAATGCAGACAGATAGCAGCAATTCTGTCTCATCTTCAGTGTCACTTCAAGGGTTTGAGCTTTGTGATGATGCAACAACTCCTTTTGTTAACATGGCGGAGCAAATACCTCCTGAACATGATAGAGGTACTCGCACTGAAAACTTAGAATCATGTCCACCCACCTGCTCTCTTGTGTCAGATGAAAGCCATGGGCAAGATAACAAATCTGTACAATGCTCGGTTGACAGCTCTGGTTTTGTTCAAGATCCTGAGGATATTACTATTGGTGGTGAGAAAGTGAGTTCAGGTGCAGTTACAGAGCACCCATCTCCAGTCTCCAGAGAAGTATTTGCTTGTAATGATGACACCTCTTTGGGCAGGTCTATTAGGCCAGAAACAGTGACAGAGTCCATCCTTACTTCTTCATCCAGTGGTGATGACAAGTTTACTGTAAGAGAACTTTTGTCATCACTAGCAGACGCCAGTGCCCCTCCCAGTGCCCCTCCCAGTGCCACTCCCACTGTCCCTTCCACTGCCACTGCCACTCCCACTGTCCCTTCCACTGCCACTCCCACTGCCACTCCCCCTGCCCCTCCTACTCCCTCCATCTTGTCTGCCCAAAAGAATTTGCAGCTGGATAAAGGAAATATTTTGCAAAATCAGTTAATTGAAAAGCCTGCCTCGGGCCATCTTCCTTCAGCTTTTGATGATGTCATACATGTTATCCGGCACAGTAGTTTCCGTGTTGGGGTTGAGCAGCCAGTGATTGAAACTGTGGAGAGGAATATGGACGTGGGAAAACTATTAAATGTAGTAAGGGATGAGTTGGAGATGAGAAACCTGAGCACTCCTGCCACTCTGAAATCAACAAATTGCTCAGAACCCATGGCTTTGAAGTCAAATCTTTCCGATACTCCTGGCATTAAGGAAATGGATGTAAGGAACACCTCCTCTTCAGTTCCAAATCCCGATTCCCCTGAGCCGACAAAACCTTGTTCTCCTGTGACAGAAGATGAAACACCAGCAAAGGAAACTCTGGATGTCAAGTCCTTTAGGCAGAGGGCAGAGGCACTTGAAGGGCTATTAGAATTGTCAGCAGAGTTGCTGGAGCAAAGTAGACTGGAAGAACTTGCTGTTGTTTTAAAACCTTTTGGAAAAGATAAGGTCTCCCCAAGGGAGACAGCTATCTGGTTGGCAAAGAGTCTTAAAGGAATGATGGTTGAGGACAGTGGACGAAGTTCATGA 2970 0.4455 MESRMDQYEIMEQIGRGAFGAAILVNHKSEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKSNGAYFPEEKLCKWFAQLLLAVEYLHSNYVLHRDLKCSNIFLTKDKDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCMYEMAAHRPAFKAFDMAGLISKINRSSIGPLPSCYSPSLKTLIKGMLRKNPEHRPSASEILKHPYLQPYVDQHRSSFNPPTAYSLEKPISTTRDSRKNMAESQGSNSSGSDKDSLLSSEKNISAMVINCDNKANDTDLGSVDDEVGSDQPSPSGENGANTCTVKMDEREVMKSSHDEHGLNAESKQPKTIKNIWMALKEGKVRENSSPMRGNRTKPGGQSTQKANTEASLKVPKPSMVSPGFKSNADAPTSIPTKAVFDSAKRIQGSHPLKHQLPMFDPSPKTKPRHDGIPLPGPSKQVVEDGLPAKPRQRTPPSNVVRRSSFPGRMRQVGPDVPNQTNNIIKVGPSEITQEPHKTQYLVPNGRATHVSREIIQQSHKALVGASKGMQTDSSNSVSSSVSLQGFELCDDATTPFVNMAEQIPPEHDRGTRTENLESCPPTCSLVSDESHGQDNKSVQCSVDSSGFVQDPEDITIGGEKVSSGAVTEHPSPVSREVFACNDDTSLGRSIRPETVTESILTSSSSGDDKFTVRELLSSLADASAPPSAPPSATPTVPSTATATPTVPSTATPTATPPAPPTPSILSAQKNLQLDKGNILQNQLIEKPASGHLPSAFDDVIHVIRHSSFRVGVEQPVIETVERNMDVGKLLNVVRDELEMRNLSTPATLKSTNCSEPMALKSNLSDTPGIKEMDVRNTSSSVPNPDSPEPTKPCSPVTEDETPAKETLDVKSFRQRAEALEGLLELSAELLEQSRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGMMVEDSGRSS* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0915 989 MobiDBLite consensus disorder prediction 629 658 - -
Vvi6g0915 989 MobiDBLite consensus disorder prediction 267 311 - -
Vvi6g0915 989 MobiDBLite consensus disorder prediction 735 779 - -
Vvi6g0915 989 MobiDBLite consensus disorder prediction 466 535 - -
Vvi6g0915 989 FunFam Serine/threonine-protein kinase Nek5 90 335 - -
Vvi6g0915 989 MobiDBLite consensus disorder prediction 619 658 - -
Vvi6g0915 989 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0915 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vvi6g0915 989 MobiDBLite consensus disorder prediction 398 448 - -
Vvi6g0915 989 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Vvi6g0915 989 MobiDBLite consensus disorder prediction 862 919 - -
Vvi6g0915 989 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0915 989 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Vvi6g0915 989 CDD STKc_Nek 7 262 - -
Vvi6g0915 989 MobiDBLite consensus disorder prediction 405 425 - -
Vvi6g0915 989 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Vvi6g0915 989 SUPERFAMILY Protein kinase-like (PK-like) 4 263 IPR011009 -
Vvi6g0915 989 MobiDBLite consensus disorder prediction 748 763 - -
Vvi6g0915 989 MobiDBLite consensus disorder prediction 342 356 - -
Vvi6g0915 989 MobiDBLite consensus disorder prediction 328 358 - -
Vvi6g0915 989 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 938 - -
Vvi6g0915 989 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0915 989 Gene3D Transferase(Phosphotransferase) domain 1 90 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0915 Vvi-Chr6 11443945 11452747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0915 14 263 MAP Kinase Kinase Kinase AT1G53570 30.980 2.77e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vvi6g0915 Pkinase 7.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0915 K08857 - vvi:100258125 1852.8