Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0910 ATGGAAGGTGATCAGTCAAAGCTGTGGGTTGTACTGATTTTGTGCATCTTCAGAGTGGCTCATTGTGCTACAGACCCCAGTGACATGAAAATTCTGAATGATTTCAGAAAAGGGTTGGAGAATTCGGAGCTCCTCAAATGGCCTGACGATGGGGATGACCCCTGTGGCCCTCCTTTGTGGCCTCATGTCTTTTGTAGTGGTGACAGAGTTGCACAGATTCAGGTTGAGGGATTGGGATTAAAGGGACCTCTCCCTCAGAACTTCAACCAGCTTTCAATGCTCTACAATTTGGGGCTTCAGAGGAACCATTTCAATGGCAAATTGCCTTCTTTTCGCGGATTGTCTGAATTGCAATTCGCCTTCTTGGATTACAACGAATTCGACACCATCCCCGCTGATTTCTTCGATGGCCTTACGAGTATTCGGATCCTTGCTCTGAATGACAATCCGTTCAATGCGACTACTGGGTGGTCTATTCCTGATGAGTTGCAGAAATCAGTTCAATTGACAACTCTTTCTTTAGGAAATTGTAATTTGGTTGGACCCCTGCCGGAATTTCTAGGGACGTTACCATCGCTCACAACGCTTAAACTGCCATATAACAGGTTATCAGGGGAGATTCCGGCGAGTTTTGGGCAATCACTGATGCAGATTCTGTGGTTGAATGATCAGGATGGAGGCGGGATGAGCGGACCAATGGACGTAATTGGATCTATGGTCTCCTTGACACAGCTATGGCTCCACGGAAACCAGTTCACGGGCACTATTCCGGAGAGCATTGGTGATCTGACTTCTTTGAGAGACCTCAATCTCAACGGAAATAAACTTGTTGGCCTGGTTCCTGAGAGCTTGGCCAATATGGAACTACAGAAATTGGACTTAAACAATAATCATCTGATGGGTCCTATACCAAAGTTCACATCTGGTAACGTTTCTTATGCTTCCAATTCATTTTGCCAGTCTGAGCCTGGGCTTCAATGCAGCCCAGAAGTTAACGCACTTTTAGATTTTCTTGCTGCTGTGAATTACCCATTAGGTCTCGCTTCTGAATGGTCTGGTAATGATCCATGCGAACAGCCATGGTTGGGGTTGGGCTGCAACCCCAATTCTAAGGTTTCTATCGTGAATCTGCCAAACTTTAGGCTTAATGGTACTCTCAGTCCTTCAATTGGGAACTTAGATTCACTAGTAGAAATTAGACTTGGGGGAAACAATTTAACTGGCACCATCCCAATGAATTTAACTAAATTGACGTCTTTGAAAAAGCTGGATGTCAGTGGCAACAATTTTGAGCCTCCAGTACCCAGATTTCAGGAGAGCGTGAAGGTGATTACCAATGGAAATCCTCGTTTGGCTGGTAACCAAACCGAGCCATCCCCCCCTCCAGGTAGCCCACCATCCCCCCCTCCAGGTAGCCCACCATCCCCTTTTAGTTCACCGCCACCGGCATTGAACCATCCACCTGCCCCTCCGGCGGGGTTGAATCATAGCCAGCCTAGTCCTGCTGGGGGGCAAGCAGAACCCAAAAGCACTTCCAAAAGATTAAAAACAGTTATAATTGTGGCTGCAATTTCAGCTTTTGCAATTCTGGCTATGTTGGTGATTCTTCTAACTTTATACTGCCGTAAGAAGAGGAAGGACCAAGTAGAGGCTCCCAGTTCCATTGTTGTTCACCCCAGAGACCCATTTGATCCAGACAACATGGTTAAGATTGCAGTCTCAAGTAACACCACTGGAAGCTTGTTCACTCAAACAGGATCTAGTATTGAGAGCAGAGATAGCAGTGGAGTGCATAATTCACATAAGATTGAATCTGGAAACCTGATAATATCTGTTCAGGTTCTCCGCAAGGTGACAGACAATTTTGCACCAGAAAATGAGCTTGGTCGTGGTGGTTTTGGGGCTGTTTATAAGGGGGAGCTGGAAGATGGTACAAAAATAGCAGTTAAGAGAATGGAAGCTGGGGTGGTTAGCAACACAGCATTGGATGAATTTCAGGCTGAAATTGCTGTTCTTTCCAAGGTCCGACACCGACATTTGGTATCTCTGTTGGGGCACTCTATTGAAGGCAATGAGAGGCTTCTGGTTTATGAGTTTATGTCTCATGGAGCTCTAAGCAGGCATCTTTTCCACTGGAAGAACCTAAAACTGGAGCCTCTATCTTGGAAGATGAGGCTCAGTATTGCTTTAGATGTGGCTAGAGGGATGGAATATCTTCATGGTCTGGCCCGTGAGAGCTTCATTCATAGAGATCTGAAATCTTCAAATATTCTTCTAGGGGATGATTTCAGGGCAAAAGTTGCAGATTTTGGTTTGGTGAAGCTTGCTCCAGACAGAGGGAAGTCTGTTGCAACCAGACTGGCTGGAACCTTTGGATACCTTGCACCTGAATATGCTGTGATGGGAAAAATTACAACAAAAGCTGATGTCTTCAGCTATGGAGTGGTGTTGATGGAACTTTTGACTGGATTAGCGGCACTTGATGAGGGGCGTTCTGAGGAATGCCGATACTTGGCCGAGTGGTTTTGGAGAATCAAATCAAGCAAAGAGAAACTCATGGCTGCTGTTGATCCTGCTATTGGTGCTACAGAAGAAACTTTTGAGAGCATCTCCGTAGTAGCTGAACTGGCTGGACACTGCACAGCAAGAGAGCCGAGCCATCGTCCTGATATGGGGCATGCAGTAAATGTACTGTCCCCACTGGTTGAGAAGTGGAAGCCGTTTGACAATGAAACAGAGAGTTATTCTGGCATCGATTACAGTCTACCACTTCCCCAGATGTTAAAGGGCTGGCAGGAAGCAGAAACCAAAGATTTCAGCCATACTAGCCTGGAGGACAGCAAAGGCAGTATTCCAGCAAGGCCTGCTGGATTTGCAGAGTCATTCACTTCTTCTGATGGGCGATGA 2907 0.4616 MEGDQSKLWVVLILCIFRVAHCATDPSDMKILNDFRKGLENSELLKWPDDGDDPCGPPLWPHVFCSGDRVAQIQVEGLGLKGPLPQNFNQLSMLYNLGLQRNHFNGKLPSFRGLSELQFAFLDYNEFDTIPADFFDGLTSIRILALNDNPFNATTGWSIPDELQKSVQLTTLSLGNCNLVGPLPEFLGTLPSLTTLKLPYNRLSGEIPASFGQSLMQILWLNDQDGGGMSGPMDVIGSMVSLTQLWLHGNQFTGTIPESIGDLTSLRDLNLNGNKLVGLVPESLANMELQKLDLNNNHLMGPIPKFTSGNVSYASNSFCQSEPGLQCSPEVNALLDFLAAVNYPLGLASEWSGNDPCEQPWLGLGCNPNSKVSIVNLPNFRLNGTLSPSIGNLDSLVEIRLGGNNLTGTIPMNLTKLTSLKKLDVSGNNFEPPVPRFQESVKVITNGNPRLAGNQTEPSPPPGSPPSPPPGSPPSPFSSPPPALNHPPAPPAGLNHSQPSPAGGQAEPKSTSKRLKTVIIVAAISAFAILAMLVILLTLYCRKKRKDQVEAPSSIVVHPRDPFDPDNMVKIAVSSNTTGSLFTQTGSSIESRDSSGVHNSHKIESGNLIISVQVLRKVTDNFAPENELGRGGFGAVYKGELEDGTKIAVKRMEAGVVSNTALDEFQAEIAVLSKVRHRHLVSLLGHSIEGNERLLVYEFMSHGALSRHLFHWKNLKLEPLSWKMRLSIALDVARGMEYLHGLARESFIHRDLKSSNILLGDDFRAKVADFGLVKLAPDRGKSVATRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEGRSEECRYLAEWFWRIKSSKEKLMAAVDPAIGATEETFESISVVAELAGHCTAREPSHRPDMGHAVNVLSPLVEKWKPFDNETESYSGIDYSLPLPQMLKGWQEAETKDFSHTSLEDSKGSIPARPAGFAESFTSSDGR* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0910 968 SMART LRR_typ_2 190 214 IPR003591 -
Vvi6g0910 968 SMART LRR_typ_2 263 286 IPR003591 -
Vvi6g0910 968 SMART LRR_typ_2 239 262 IPR003591 -
Vvi6g0910 968 SMART LRR_typ_2 114 137 IPR003591 -
Vvi6g0910 968 MobiDBLite consensus disorder prediction 455 495 - -
Vvi6g0910 968 SUPERFAMILY Protein kinase-like (PK-like) 597 898 IPR011009 -
Vvi6g0910 968 SUPERFAMILY L domain-like 64 435 - -
Vvi6g0910 968 FunFam Leucine-rich repeat receptor-like kinase 329 454 - -
Vvi6g0910 968 Pfam Protein tyrosine and serine/threonine kinase 625 896 IPR001245 GO:0004672|GO:0006468
Vvi6g0910 968 MobiDBLite consensus disorder prediction 447 511 - -
Vvi6g0910 968 MobiDBLite consensus disorder prediction 938 968 - -
Vvi6g0910 968 FunFam Receptor-like kinase TMK4 26 324 - -
Vvi6g0910 968 FunFam receptor protein kinase TMK1 584 699 - -
Vvi6g0910 968 Pfam Leucine rich repeat 241 299 IPR001611 GO:0005515
Vvi6g0910 968 ProSiteProfiles Protein kinase domain profile. 622 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0910 968 PANTHER OSJNBA0070M12.3 PROTEIN 11 968 - -
Vvi6g0910 968 Pfam Leucine rich repeat N-terminal domain 329 367 IPR013210 -
Vvi6g0910 968 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Vvi6g0910 968 ProSitePatterns Protein kinases ATP-binding region signature. 628 650 IPR017441 GO:0005524
Vvi6g0910 968 CDD STKc_IRAK 628 901 - -
Vvi6g0910 968 Gene3D Phosphorylase Kinase; domain 1 583 699 - -
Vvi6g0910 968 SMART serkin_6 622 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0910 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 747 759 IPR008271 GO:0004672|GO:0006468
Vvi6g0910 968 Gene3D Transferase(Phosphotransferase) domain 1 700 917 - -
Vvi6g0910 968 Gene3D Ribonuclease Inhibitor 329 455 IPR032675 -
Vvi6g0910 968 FunFam receptor protein kinase TMK1 700 917 - -
Vvi6g0910 968 Gene3D Ribonuclease Inhibitor 25 324 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0910 Vvi-Chr6 11254175 11257973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0910 82 903 Receptor kinase-like Gene Family AT5G07280 31.862 4.89e-80 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vvi6g0910 PK_Tyr_Ser-Thr 6.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0910 - - vvi:100253071 1867.82