Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0901 ATGGCAACGTACTTTCATGGGAGTTCAGAAATCCAAGCTGACGGATTGCAGACACTTTATCTCATGAATCCAAACTACATAGGCTACTCTGACACACAGCAACCTTCTGCAGCCAACATGCTCTTCCTCAACGCTACTCCAAACTCGCTCAATCCTACAAACCTACCAAATATGTCACTGCAAAACCAGCACTTTGTTGGGATCCCACTTCCAAACATGGGATCAGCCAATTCTGATGATCAAAACCGCTCCTCACTGCATGCCCAGCCTGAGATGTCATCTCTACAAGGGATAGTCCCTCGTTTTCACTACAATTTATGGGGCTCAACTGATCAAAATCCCACCGGAAACCAGCCCCAGATTCCAACAGCGGTGGCGGCCGCCAGTTCTGGCGGTGCAGCTGACGTTACATCGCAGTTGGGGTTACGGCGACAAGTTGTTTCACCTACTCAGCAAGGTTTATCGCTGAGCCTTTCGCCTCATCAGCCTACTTACCGGTCAGTTCCCGGGGAGCATGACATTCAGGTGCAGCAACAGCCTCCAGTCCAGGCAATATCGCCCACAAGTGGCGATGATATGCGAGTATCGGGGGGTTCTTCATCGACAGCATCTGCAGTTTCGAATGGAATTTCTGGTATGCAAAGCGTTCTTTTGGGGTCCAAGTACTTGAAGGCTGCACAGCAGCTTCTGGATGAGGTCGCTAACGTTGGGAAGGGAATCAAGACTGATTCCGGCGAAGAAACTAAAGAGAGGGAGAAGGTGAACACTATCTCAGTGGCTGCATCGACCGGAGAAGCCCTGAGTGGAGGCGAAAGTAGTGCCAAACGTGGAGCTGAGCTATCCACAGCACAAAGGCAGGAGCTTCAGATGAAGAAAGCCAAGCTTGTCAACATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCAACAAATGCAAATTGTAGTTTCTTCATTTGAGCAAGCAGCTGGGCAGGGATCAGCAAAATCATACACTGCCTTGGCTTTACAGACCATCTCAAAGCAGTTCAGGTGTCTAAAAGACGCCATTTCTGCACAAATCAAAGCCACAAGCAGCAGCTTAGGTGAAGAAGACTGCTCAGGAGGGAAGGTGGAAGGTTCTAGACTAAGGTTTGTGGATCATCAGCTTCGGCAACAGCGTGCCTTGCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCACAGAGAGGACTTCCTGAGAGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTTCACCCCTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTTGAAGAAATGTACTTGGAGGAAATAAAGGATCAGGAGCACAATGGTTCCCAAGACAATGCAAGCAAGAGTGAAGCCAACAAGGAGTTGGGTTCAAAATCCACTGCCGCACAAGAGAGTGGTGCAACTAGGGTGGATCAAACAAACGATTTCCAATCCAAACAAGAAAAATCGACCACCCAGAATGCTTCTCCTGCTGAGCTTTCAAATTCCACAATGTCGACATCCCCCATGGGAGGCTCACTTCAAGTCCAAGCTGGCTTCAATCTCATAGGGTCATCTGAGATTGAAGGTATGGTTCAAAGAAGTCCAAAAAAACCAAGAAGCTATGACATTCAGAGTTCACCCAGTAGCATTCTCTCAATGGACATGGAAATGAAACCCGGTGGGACAAGTAGGGAAATTAGCATGAAGTTTGGTAGTGAAAGGCAAGCCAAGGATGGATATCCATTAATAACAGGAGCTATAAATAATGGTGGTGGATTTGGCGCATACTCCCCCATTGGAGACATAGGAAGGTTTAACCCTGAGCAGTTGGCACCCAGATTTCATGGAAATAGTGTTTCCCTCACTCTTGGTCTTCCCCACTGTGAAAACCTCTCTCTGTCAGGAAGCCAACAAAGCTACCTATCCAATCCAAACGTTCAGTTGGGAAGGAGACTTGAAATGGGAAACGGTGAACCGGACTACTGTGGGATCAATGCTGCACAACCTTCTCATTCCAACGCTGCTTACGACAGCATCAACATTCAAAACAGAAAGAGGTTTGCTGCTCAGTTGCTACCAGATTTTGTGGCCTGA 2187 0.4815 MATYFHGSSEIQADGLQTLYLMNPNYIGYSDTQQPSAANMLFLNATPNSLNPTNLPNMSLQNQHFVGIPLPNMGSANSDDQNRSSLHAQPEMSSLQGIVPRFHYNLWGSTDQNPTGNQPQIPTAVAAASSGGAADVTSQLGLRRQVVSPTQQGLSLSLSPHQPTYRSVPGEHDIQVQQQPPVQAISPTSGDDMRVSGGSSSTASAVSNGISGMQSVLLGSKYLKAAQQLLDEVANVGKGIKTDSGEETKEREKVNTISVAASTGEALSGGESSAKRGAELSTAQRQELQMKKAKLVNMLDEVEQRYRQYHQQMQIVVSSFEQAAGQGSAKSYTALALQTISKQFRCLKDAISAQIKATSSSLGEEDCSGGKVEGSRLRFVDHQLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEHNGSQDNASKSEANKELGSKSTAAQESGATRVDQTNDFQSKQEKSTTQNASPAELSNSTMSTSPMGGSLQVQAGFNLIGSSEIEGMVQRSPKKPRSYDIQSSPSSILSMDMEMKPGGTSREISMKFGSERQAKDGYPLITGAINNGGGFGAYSPIGDIGRFNPEQLAPRFHGNSVSLTLGLPHCENLSLSGSQQSYLSNPNVQLGRRLEMGNGEPDYCGINAAQPSHSNAAYDSINIQNRKRFAAQLLPDFVA* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0901 728 MobiDBLite consensus disorder prediction 109 125 - -
Vvi6g0901 728 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 112 486 - -
Vvi6g0901 728 MobiDBLite consensus disorder prediction 472 543 - -
Vvi6g0901 728 Coils Coil 285 312 - -
Vvi6g0901 728 ProSiteProfiles 'Homeobox' domain profile. 398 461 IPR001356 GO:0003677
Vvi6g0901 728 MobiDBLite consensus disorder prediction 146 168 - -
Vvi6g0901 728 MobiDBLite consensus disorder prediction 481 543 - -
Vvi6g0901 728 SMART prehox3 211 353 IPR006563 -
Vvi6g0901 728 SMART HOX_1 401 465 IPR001356 GO:0003677
Vvi6g0901 728 Pfam Homeobox KN domain 418 457 IPR008422 GO:0003677|GO:0006355
Vvi6g0901 728 MobiDBLite consensus disorder prediction 109 129 - -
Vvi6g0901 728 SUPERFAMILY Homeodomain-like 402 467 IPR009057 -
Vvi6g0901 728 CDD homeodomain 401 462 IPR001356 GO:0003677
Vvi6g0901 728 MobiDBLite consensus disorder prediction 180 206 - -
Vvi6g0901 728 MobiDBLite consensus disorder prediction 261 283 - -
Vvi6g0901 728 MobiDBLite consensus disorder prediction 146 164 - -
Vvi6g0901 728 Gene3D - 397 475 - -
Vvi6g0901 728 FunFam BEL1-like homeodomain protein 9 404 466 - -
Vvi6g0901 728 Pfam Associated with HOX 216 352 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0901 Vvi-Chr6 10835529 10838854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0901 1 728 Homeobox Transcription Factor Family AT2G35940 44.836 9.99e-157 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vvi6g0901 POX 1.2e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0901 - - vvi:100259827 1381.31