Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0898 ATGGATGACATCGAGATACCGCAATATTTCTTATGCCCTATATCTCTTCAGATCATGAAAGACCCGGTTACAGCCATGACGGGCATCACCTATGATCGAGAAAGCATTGAGCAGTGGTTGTTGACAGCCAAGGATACCACTTGTCCGGTAACCAAGCAGCCTTTGGAGCGAGACTTTGTATTGACGCCCAATCACACACTCCGCCGCCTAATTCAAGCATGGTGTGCTGACAATGCAACGAATGGCGTGGATCGGATTCCTACTCCGAAGACTCCTCTGGACAGAACCCATGTCGTTAAACTTATTCGCGATCTGGGTGTTGCTCAATTGTATCTGAAAACATTGCAGAAGATGGAAGCTCTTACTAGAGATAACGAAAGGAACAGGAACTGTATGGCGGATGCAGGCGCAGCGAAGGCTATTGTTTTGTTGATCATAAAGTGTTTCAAGGAAAACAAGACCACCGGGGTAGAGGAAGGGCTGAGAATCCTTCATCTTATTTGGAGTCCAACCTCTGAAATGAAGCTCCTTCTAAAAGAAAACTACGATTTCGTGGATGCAGTAACATGGGCTTTAGGCTGCGAGACCGACAATTATGTGGCTGTGAGATCAAATGCAGTGTTGGTTTTAAAAAATATAGTGGAAGTTGCTAGTCCAAATCTTCTGGAGCGATTAAAGTTTGAATTCCTCAACAGACTCATAAGGACGATGAGGGAGAAAATCTCTCAAGCAGCTATGAAAGCCGCCTTGTACGTCCTAATGGAGGTATGCCCTTGGGGGAGAAACAAATGGCAAATGATCGAAGCCGGTGCAGTGTTCCAGCTCATCGAAATGGAACTAGAAAACCCAGAAAAGAAGATCACAGAAATCATCTTCTGTCTGTTGGGTCATCTATGTTCCTGTGCTGATGGTAGAGCTCAGTTTCTAGCCCATGCGGGAAGCATGGCCATGCTGTCAAAAAGGATCTTAAGGGTATCTAACACGACTGACGATCGAGCACTTCACATAATTGCATTGATCTCCAAGTTCTCAGGGACAAACGAAGTCCTTATGGAGATGCTGAGAGTTGGGGCAGTGTCAAAGCTTTGCATGGTGCTTCAAGCAGATTGTGCAAAGTACTTGAAAGAGAAAGCAAGGGAGATCCTCAGGTTGCATTCCAAGGTGTGGAACAACTCTCCTTGTATTGCTGTTTATCTTTTAACAAGGTACGCTAGGTAA 1218 0.4524 MDDIEIPQYFLCPISLQIMKDPVTAMTGITYDRESIEQWLLTAKDTTCPVTKQPLERDFVLTPNHTLRRLIQAWCADNATNGVDRIPTPKTPLDRTHVVKLIRDLGVAQLYLKTLQKMEALTRDNERNRNCMADAGAAKAIVLLIIKCFKENKTTGVEEGLRILHLIWSPTSEMKLLLKENYDFVDAVTWALGCETDNYVAVRSNAVLVLKNIVEVASPNLLERLKFEFLNRLIRTMREKISQAAMKAALYVLMEVCPWGRNKWQMIEAGAVFQLIEMELENPEKKITEIIFCLLGHLCSCADGRAQFLAHAGSMAMLSKRILRVSNTTDDRALHIIALISKFSGTNEVLMEMLRVGAVSKLCMVLQADCAKYLKEKAREILRLHSKVWNNSPCIAVYLLTRYAR* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0898 405 SUPERFAMILY ARM repeat 113 381 IPR016024 -
Vvi6g0898 405 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Vvi6g0898 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Vvi6g0898 405 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Vvi6g0898 405 PANTHER WDSAM1 PROTEIN 3 396 IPR045185 GO:0061630
Vvi6g0898 405 SUPERFAMILY RING/U-box 3 82 - -
Vvi6g0898 405 CDD RING-Ubox_WDSUB1-like 7 64 - -
Vvi6g0898 405 Gene3D - 107 384 IPR011989 -
Vvi6g0898 405 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0898 Vvi-Chr6 10751229 10752446 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0898 2 402 U-box Gene Family AT3G11840 42.377 1.63e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0898 - - vvi:100261566 809.29