Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0894 ATGGATGAAATCGATGTTCCTTCTCATTTTATGTGCCCAATTTCCCTGCAACTCATGAGAGATCCAGTCACGGTTGCAACTGGGATCACATACGATCGAGAGAACATAGAGAGATGGTTGTTTTCATGCAAAAACAACACTTGTCCATTCACAAAACAGGTACTTGTTGACACAGACCTAACTCCAAACCACACCCTTCGAAGATTGATCCAGGCATGGTGCATCGTCAACGCCTGTCATGGGGTTGAACGGATTCCAACACCAAAGCCTCCTATCGACAAAGCCCAGATCATCAAACTCCTCAATGATGCCATCAAGTTCCCACAGATGCAGCTCAAATGCCTCCAAAGGCTTAGATCCATTGCATTCGAAAGCGACAGGAACAAAAAGTGTTTGGAAGCTGCAGGTGCAGTTGAATTCTTAGCTTCCATCATAAAGAAAGATGAATCAGCAGTGATTGAAGTTGTTCTGGAGGATGGTTCTCGTGAGTTTACAAGAGCAAGTGATGAGGCGCTGAGCATCCTCTATCAACTCGAAACCTCGGAAGCGGCCCTCAAGAGTCTTGTAAGCAGTAACTACGGATTTATAGAGTCGTTGGTACATGTTCTGAAATGCGGAAACTACCAATCTCGGGCATATGCAGCCATGCTATTGAAGTCCATCTTCCAGGTGGCAGATCCAATCCAATTGATCAATGCTAGCCCTGAATTGTTCACGGAGATAGTCCATGTATTGCGCGATGGGATTTCACAGCAAGCCTCAAAGGCAGCACTGAAGCTTCTTGTGGAGCTTTGTCCATGGGGAAGAAACCGAATCAAGGCAGTGGTAGCCGGTGTATCACATGTCTTGATTGAGCATCTTCTTGACACCTCAGAAAAGAGAACCTGTGAACTAATCCTAGTTGTTTTGGATCAACTATGCAGCTGTGCTGAAGGGCGAGCGGAGCTGTTGAAGCATGGGGCTGGGCTGGCCATAGTTTCCAAGAAAATACTTAGGGTTTCTCAGGTGGGAACTGATAGGGCAGTGAAAATCTTGGCCTCTGTTTCAAAGTTTTCAGCAACTTCTAGGGTTCTTCAAGAGATGTTGCAAGTGGGTGTTGTTTCCAAGTTGTGTTTGGTGCTTCAAGTGGACTCTAGTAAAAAAACCAAAGAGAAAACAAGGGAGATCCTCAACTTGCACTCTAGGGTTTGGAAGAACCCTTCATGTATTCCTGCTCGTTTGTTCTCATCTTATCCATCTTCTTGA 1245 0.4538 MDEIDVPSHFMCPISLQLMRDPVTVATGITYDRENIERWLFSCKNNTCPFTKQVLVDTDLTPNHTLRRLIQAWCIVNACHGVERIPTPKPPIDKAQIIKLLNDAIKFPQMQLKCLQRLRSIAFESDRNKKCLEAAGAVEFLASIIKKDESAVIEVVLEDGSREFTRASDEALSILYQLETSEAALKSLVSSNYGFIESLVHVLKCGNYQSRAYAAMLLKSIFQVADPIQLINASPELFTEIVHVLRDGISQQASKAALKLLVELCPWGRNRIKAVVAGVSHVLIEHLLDTSEKRTCELILVVLDQLCSCAEGRAELLKHGAGLAIVSKKILRVSQVGTDRAVKILASVSKFSATSRVLQEMLQVGVVSKLCLVLQVDSSKKTKEKTREILNLHSRVWKNPSCIPARLFSSYPSS* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0894 414 Gene3D - 75 402 IPR011989 -
Vvi6g0894 414 PANTHER WDSAM1 PROTEIN 3 404 IPR045185 GO:0061630
Vvi6g0894 414 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Vvi6g0894 414 CDD RING-Ubox_PUB 7 60 IPR045210 -
Vvi6g0894 414 Pfam U-box domain 6 74 IPR003613 GO:0004842|GO:0016567
Vvi6g0894 414 SUPERFAMILY RING/U-box 3 81 - -
Vvi6g0894 414 SUPERFAMILY ARM repeat 97 389 IPR016024 -
Vvi6g0894 414 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Vvi6g0894 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 74 IPR013083 -
Vvi6g0894 414 FunFam RING-type E3 ubiquitin transferase 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0894 Vvi-Chr6 10566868 10568112 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0894 2 412 U-box Gene Family AT2G35930 55.529 6.45e-167 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0894 - - vvi:100254792 809.675