Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0891 ATGACAACGACGGCAAGCGAGGAGGATTTGCTTCTGAAGAACTTCTTCGCCGAAGTCAGCGAGGTGGAGAGGGACAACGAAGTTGTCAGAATTCTTGCATGCTTCAAGTTAAATGCCTTTGAGTATCTTAACATCCCCTTTGATTCTTCCCCAGATGATGTGAAAAAGCAATACCGTAAGTTGTCTTTGCTGGTTCACCCTGACAAGTGCAAGCACCCACAAGCTAAAGAAGCATTCGGAGCATTAGCGAAGGCCCAGCAGTTATTACTTGATCCTCAAGAAAGAGAGTATCTTCTTAGCCAAGTTAATGCAGCAAAAGAAGAGCTTAGGGCAATGAGGAAGAAGCAGCTAAAGAAAGATAATGCCTCTAAAATAAAGTCATTAGTTGATGAGGGAAAATATGAACAAGAATATGAACGATCAGAGGAGTTCCAAAAACAACTAAAATTGAAGGTTCGAGAACTACTGACAGAACAAGAATGGCGACGGAGAAAAATGCAGATGAGGATATCAGAAGAGGAAGGTAGATTGAAGAAAGATGAAGAAGACACAAAAGAGATGTGGAAAAGAAAGCGTGAGCACGAGGAGCAGTGGGAAGGAACAAGAGAACAAAGGGTTTCCAGCTGGAGAGATTTCATGAAGACTGGAAAGAAGGGTAAGAAAGGAGAGATCCGACCGCCAAAGCTGAAGACAGAAGACCCCAACAAATCCTATGTTCAAAGGCCAGTGAAGCGAGGTTAA 741 0.4305 MTTTASEEDLLLKNFFAEVSEVERDNEVVRILACFKLNAFEYLNIPFDSSPDDVKKQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLLLDPQEREYLLSQVNAAKEELRAMRKKQLKKDNASKIKSLVDEGKYEQEYERSEEFQKQLKLKVRELLTEQEWRRRKMQMRISEEEGRLKKDEEDTKEMWKRKREHEEQWEGTREQRVSSWRDFMKTGKKGKKGEIRPPKLKTEDPNKSYVQRPVKRG* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0891 246 PRINTS DnaJ domain signature 58 73 IPR001623 -
Vvi6g0891 246 PRINTS DnaJ domain signature 40 58 IPR001623 -
Vvi6g0891 246 PRINTS DnaJ domain signature 74 94 IPR001623 -
Vvi6g0891 246 MobiDBLite consensus disorder prediction 171 246 - -
Vvi6g0891 246 SMART dnaj_3 37 94 IPR001623 -
Vvi6g0891 246 Coils Coil 95 119 - -
Vvi6g0891 246 Gene3D DnaJ domain 16 98 IPR036869 -
Vvi6g0891 246 Pfam DnaJ domain 39 96 IPR001623 -
Vvi6g0891 246 SUPERFAMILY Chaperone J-domain 34 96 IPR036869 -
Vvi6g0891 246 CDD DnaJ 38 91 IPR001623 -
Vvi6g0891 246 Coils Coil 163 183 - -
Vvi6g0891 246 MobiDBLite consensus disorder prediction 171 240 - -
Vvi6g0891 246 ProSiteProfiles dnaJ domain profile. 38 94 IPR001623 -
Vvi6g0891 246 PANTHER J DOMAIN-CONTAINING PROTEIN SPF31 5 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0891 Vvi-Chr6 10340395 10360195 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0891 40 101 C2H2 Transcription Factor Family AT1G74250 36.765 1.60e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0891 K09528 - vvi:100258929 493.812