Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0890 ATGGATGTAGATTCTTCAATGGTGCCGGAGACCGATCAGGATCCGTCGACGCCGAACCACGGCGCTCCTTCGATCTCGGCTTCGATGGAGCGGGAGCAGCAGCTAGGCGCTGCGGAGCAGTCGGCTCCGGCCCAACCTCCGGCGCAGCAGCAACAGCAGCAGCAGCAGCAGGCTCAGGTGCAGCAGAGTCCTGTGGCTGGGCCGAGGCACGCTCCGACGTACTCGGTCGTGAACGCGGTGATAGAGAAGAAAGAGGACGGCCCGGGGCCAAGGTGCGGCCACACTTTGACGGCGGTTGCGGCGGTAGGAGAAGAAGGGACGCCGGGCTACATTGGGCCGAGGTTGATTTTGTTTGGTGGTGCCACGGCTCTTGAGGGCAATTCCGCGGCTTCTGGGACGCCTTCATCTGCGGGAAGCGCTGGCATCCGATTAGCAGGTGCCACAGCCGATGTGCACTGTTATGATGTGATAACAAATAAGTGGTCTAGGATCACTCCCTTTGGAGAACCGCCCACTCCTAGGGCAGCACATGTGGCAACTGCTGTGGGAACTATGGTAGTTATTCAGGGTGGGATTGGTCCAGCTGGTTTATCTGCTGAAGATCTTCATGTTCTTGACCTCACACAGCAGCGGCCTCGATGGCACAGGGTTGTGGTTCAAGGCCCTGGGCCGGGCCCTCGTTATGGACATGTCATGGCTTTGGTGGGGCAAAGATATCTTATGGCAATTGGTGGAAATGATGGGAAGAGGCCTTTGGCCGATGTTTGGGCTCTCGATACAGCCGCAAAGCCTTATGAATGGCGGAAGTTGGAACCAGAAGGGGAGGGTCCACCTCCGTGCATGTATGCAACTGCAAGTGCACGCTCTGATGGCCTTCTTTTGCTTTGTGGAGGGAGGGATGCAAACAGTGTGCCATTGGCAAGTGCATATGGACTTGCTAAACATAGAGATGGTCGTTGGGAATGGGCAATTGCTCCTGGTGTTTCACCTTCTCCTAGATATCAACATGCAGCAGTTTTTGTTAATGCTCGGCTCCATGTATCTGGAGGGGCACTTGGTGGTGGACGCATGGTAGAAGATTCATCAAGTGTTGCAGTGTTGGATACTGCAGCAGGCGTTTGGTGTGATACGAAGTCTGTAGTCACTAGTCCCAGGACAGGCAAATATAGTGCTGATGCAGCTGGTGGGGACGCTGCAGTTGAATTGACCAGGCGTTGCAGACATGCGGCTGCTGCTGTTGGTGACTTGATCTTTATTTATGGTGGTTTACGTGGTGGTGTGTTGCTTGATGACCTGCTTGTTGCTGAAGATCTGGCTGCTGCTGAAACAACAAGTGCAGCTTCACATGCAGCAGCAGCAGCAGCTGCATCGAATTTACAGGCAGGGAGGTTACCTGGAAGGTATGGATTCATCGATGAAAGAACGAGGCAAACAATTCCTGAGGCAGCTCCTGATGGTTCAGTTGTCCTGGGAACTCCTGTAGCTCCTCCTGTAAATGGTGATATGTATACTGATATAAGCACTGAAAATGCAATGCTCCAGGGATCCCGGAGACTGAGTAAAGGTGTTGAGTACTTGGTTGAGGCCTCAGCAGCCGAAGCTGAGGCTATAAGTGCCACATTAGCTGCTGCAAAAGCTCGGCAAGTCAATGGAGAAGTTGAACTACCAGACCGGGATCGTGGGGCAGAGGCTACCCCTAGTGGAAAACAGATATCTACCTTGATTAAAATGCCTGATTCTGCTGGATCAAATAATATTGCTCCTGCTGGAGTTCGGTTGCATCACAGGGCTGTGGTTGTAGCTGCTGAAACTGGTGGAGCTTTGGGTGGCATGGTGAGACAACTCTCAATTGACCAGTTTGAAAATGAGGGCAGAAGGGTCAGCTATGGAACTCCAGAGAGTGCAACTGCAGCAAGGAAACTATTGGATCGGCAAATGTCTATCAACAGTGTGCCCAAGAAGGTGATAGCACATCTTCTGAAGCCTCGTGGTTGGAAGCCTCCGGTTCGCCGGCAATTTTTCCTAGATTGCAATGAAATAGCGGATCTTTGTGACAGTGCTGAACGGATATTTTCAAGTGAACCAAGTGTTCTTCAGATAAAAGCCCCTGTTAAGATATTTGGTGATTTGCATGGGCAATTTGGGGATCTCATGCGCCTTTTTGATGAGTATGGTTCCCCTTCAACTGCTGGAGACATTGCATATATAGATTATCTCTTCTTAGGAGACTATGTGGACCGTGGTCAACACAGTCTGGAAACTATTACACTTCTCCTTGCTTTGAAGGTTGAGTATCCCCTCAATGTACATTTAATTCGTGGTAATCATGAGGCTGCAGATATCAATGCTCTTTTCGGTTTCCGGATTGAATGTATTGAGCGCATGGGTGAGAGGGATGGAATCTGGGCCTGGCATCGGATAAATCGATTGTTCAATTGGCTTCCTCTAGCTGCTCTAATTGAAAAGAAAATAATCTGTATGCATGGTGGTATTGGTCGCTCAATAAATCATGTGGAACAGATTGAGAATCTTCAACGGCCAATCACAATGGAAGCAGGCTCAATTGTTCTTATGGATTTATTGTGGTCTGACCCAACAGAGAATGACAGTGTGGAAGGATTGCGACCAAATGCTAGAGGTCCAGGGTTGGTTACTTTTGGGCCTGATCGTGTTATGGAGTTCTGCAACAACAATGATCTTCAGCTGATTGTACGTGCACACGAATGTGTGATGGATGGCTTTGAGCGATTTGCGCAGGGACATTTGATTACTCTTTTCTCGGCCACCAATTACTGTGGTACAGCAAATAATGCTGGGGCAATCTTAGTTTTGGGTAGAGACCTTGTGGTGGTTCCAAAACTTATTCACCCATTACCTCCAGCAATTTCATCGCCAGAAACATCGCCTGAACGCCATTTAGAAGATACATGGATGCAGGAGCTTAATGCTAACCGACCTCCGACTCCAACTAGAGGGCGTCCTCAAGTTACAAATGATAGGGGTTCTCTTGCTTGGATTTAG 3021 0.4988 MDVDSSMVPETDQDPSTPNHGAPSISASMEREQQLGAAEQSAPAQPPAQQQQQQQQQAQVQQSPVAGPRHAPTYSVVNAVIEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVITNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGKYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTSAASHAAAAAAASNLQAGRLPGRYGFIDERTRQTIPEAAPDGSVVLGTPVAPPVNGDMYTDISTENAMLQGSRRLSKGVEYLVEASAAEAEAISATLAAAKARQVNGEVELPDRDRGAEATPSGKQISTLIKMPDSAGSNNIAPAGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQIKAPVKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPLNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHLEDTWMQELNANRPPTPTRGRPQVTNDRGSLAWI* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0890 1006 ProSitePatterns Serine/threonine specific protein phosphatases signature. 772 777 IPR006186 GO:0016787
Vvi6g0890 1006 Gene3D - 639 975 IPR029052 -
Vvi6g0890 1006 FunFam Serine/threonine-protein phosphatase 271 471 - -
Vvi6g0890 1006 Gene3D - 70 198 IPR015915 GO:0005515
Vvi6g0890 1006 MobiDBLite consensus disorder prediction 982 1006 - -
Vvi6g0890 1006 SUPERFAMILY Metallo-dependent phosphatases 660 966 IPR029052 -
Vvi6g0890 1006 FunFam Serine/threonine-protein phosphatase 70 267 - -
Vvi6g0890 1006 Pfam Calcineurin-like phosphoesterase 703 910 IPR004843 GO:0016787
Vvi6g0890 1006 CDD MPP_Bsu1_C 655 957 IPR041758 -
Vvi6g0890 1006 PRINTS Serine/threonine phosphatase family signature 839 866 IPR006186 GO:0016787
Vvi6g0890 1006 PRINTS Serine/threonine phosphatase family signature 703 730 IPR006186 GO:0016787
Vvi6g0890 1006 PRINTS Serine/threonine phosphatase family signature 921 937 IPR006186 GO:0016787
Vvi6g0890 1006 PRINTS Serine/threonine phosphatase family signature 809 835 IPR006186 GO:0016787
Vvi6g0890 1006 PRINTS Serine/threonine phosphatase family signature 738 765 IPR006186 GO:0016787
Vvi6g0890 1006 PRINTS Serine/threonine phosphatase family signature 771 795 IPR006186 GO:0016787
Vvi6g0890 1006 PRINTS Serine/threonine phosphatase family signature 899 919 IPR006186 GO:0016787
Vvi6g0890 1006 MobiDBLite consensus disorder prediction 982 997 - -
Vvi6g0890 1006 SMART pp2a_7 675 959 IPR006186 GO:0016787
Vvi6g0890 1006 Pfam Kelch motif 332 378 IPR011498 GO:0005515
Vvi6g0890 1006 MobiDBLite consensus disorder prediction 1 70 - -
Vvi6g0890 1006 Pfam Galactose oxidase, central domain 226 279 - -
Vvi6g0890 1006 Gene3D - 199 451 IPR015915 GO:0005515
Vvi6g0890 1006 FunFam Serine/threonine-protein phosphatase 639 979 - -
Vvi6g0890 1006 SUPERFAMILY Kelch motif 145 435 IPR015915 GO:0005515
Vvi6g0890 1006 PIRSF STPPP_BSU1 40 1006 IPR012391 GO:0004721|GO:0009742
Vvi6g0890 1006 MobiDBLite consensus disorder prediction 9 68 - -
Vvi6g0890 1006 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0890 Vvi-Chr6 10304905 10338660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0890 667 902 Calmodulin-binding Proteins AT5G63870 29.779 4.53e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0890 - - vvi:100253675 1880.92