Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0885 ATGGGGGTCTCAGGGAAATGGATTAAAGCATTGGTTGGTTTAAAGAAATCAGAAAAGTCGCAGTCTTCAGAGAAGGATGAAAATAGAACAGCAGCAGGTAGCAAGTTTTGGCACAGGAGAAAGCATTCTGTTGAGATTAATACTGATTTACTTCAAGTTGAGTTAGATCAGAATGCTGCTCCACCAGTGGAAGATACTGATCTCAATTCAGTCCCAGATCCTGCTGGTTCCCCTTCTGGTTCAAATCAAGCACAAGATGCAGTTCAAGTTCAGCAAAATGTGAGGGAAGAGTGGGCTGCAACATACATCCAAACAGCTTTTCGAGGATTTTTGGCTAGAAGAGCTCTACGCGCTTTGAAAGGGTTGGTAAGACTTCAAGCCCTCGTTAGGGGCCATGCTGTGCGAAAGCAAGCTGCAATAACTCTACGCTGCATGCAAGCTTTAGTGAGAGTTCAAGCTCGTGTCCGTGCAAGACGTGTTCGCTTGGCATTGGAAAGTCAAACAGCACAACAAAAACTTCAACTGCAACTAGCAAATGAGGCTCGTGTTCGAGAAATTGAGGAAGGGTGGTGCGATAGTGTAGGATCTGTTGAAGATATTCAAGCCAAATTGCTAAAAAGGCAGGAGGCAGCAGCTAAGCGAGAGAGAGCCATGGCCTATGCTCTGGCTCATCAGGCCTGTGTAAGATCATTTCTGTTCCTGCAGTGGCAGGCGGGATCAAGGCAGCAGGCTGCTCCCTCTGAGTTTGAACCAGATAAAAGCAACTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCATGGGAGAATCGGTTTCTTGACATAAATCTGAGAGATGGAGTGATGATTCGTGAGAATGGTTCAACTGAGGGAAAGAATGGCTCCAAGACCCAGTCAAAATCTGCTGGAAAGAAACCCATTTCTTTAAATCTCTCAAATCAGAAAATGGGTCCATCTAATTCTGATGGGGGTAGTTCTTCTCCCACTAAATCAGCAATGTTTCAAGAGGCATCCAGCACGGTTTCAGCCAAGCCAAAGTCTAAGCCAATTCTTGAAGATCTGGCTGAAGAAGCCAACTCTAGACCTGGTGTTGGGTCTAGATCCCACAGCAATCCAAAAGAGAGATCCACACTACAAGATAAACAGGCAAAGAAGCGGTTGTCTCTGCCCAACAGCGGGATAGGTTCTGGGGCTCAAGCAACCAGGCAGCAAAGTAGAAGTGTGTTAAAAAAAGCAGCAAGTGCACAGAAGCCGATAAAGGATAATTCCAAGGTGAACATAAAGGGGGACTTGGAGACTACAAAATCTACATCGGTCAGTGATCTCTAG 1335 0.4592 MGVSGKWIKALVGLKKSEKSQSSEKDENRTAAGSKFWHRRKHSVEINTDLLQVELDQNAAPPVEDTDLNSVPDPAGSPSGSNQAQDAVQVQQNVREEWAATYIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQTAQQKLQLQLANEARVREIEEGWCDSVGSVEDIQAKLLKRQEAAAKRERAMAYALAHQACVRSFLFLQWQAGSRQQAAPSEFEPDKSNWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSTEGKNGSKTQSKSAGKKPISLNLSNQKMGPSNSDGGSSSPTKSAMFQEASSTVSAKPKSKPILEDLAEEANSRPGVGSRSHSNPKERSTLQDKQAKKRLSLPNSGIGSGAQATRQQSRSVLKKAASAQKPIKDNSKVNIKGDLETTKSTSVSDL* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0885 444 MobiDBLite consensus disorder prediction 287 444 - -
Vvi6g0885 444 Gene3D - 95 143 - -
Vvi6g0885 444 MobiDBLite consensus disorder prediction 72 90 - -
Vvi6g0885 444 MobiDBLite consensus disorder prediction 14 38 - -
Vvi6g0885 444 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Vvi6g0885 444 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515
Vvi6g0885 444 FunFam IQ-domain 11 95 146 - -
Vvi6g0885 444 SMART iq_5 118 139 IPR000048 GO:0005515
Vvi6g0885 444 SMART iq_5 95 117 IPR000048 GO:0005515
Vvi6g0885 444 MobiDBLite consensus disorder prediction 290 347 - -
Vvi6g0885 444 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Vvi6g0885 444 PANTHER IQ-DOMAIN 5-RELATED 1 401 - -
Vvi6g0885 444 MobiDBLite consensus disorder prediction 18 38 - -
Vvi6g0885 444 MobiDBLite consensus disorder prediction 61 90 - -
Vvi6g0885 444 MobiDBLite consensus disorder prediction 394 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0885 Vvi-Chr6 10159255 10173398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0885 1 428 IQD Protein Family AT3G22190 60.460 1.16e-132 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0885 - - vri:117915827 785.793