Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0880 ATGGCAACACCTACAAATGACAGAGCTACAAACAGATACATTCATAGGGAAGTTGGTGAGAAACCAGTCAAGTACAGGATCCTCTTGCTTTGTGGTCCCCCAGGACTTGGGAAGACAACACTTGCACATGTCGCTGCTAAGCATTGTGGATACCGTGTGGTGGAGATAAATGCTAGTGATGATCGGTCATCTTCAACAATTGAAGCTAAAATCCTTGATGTGGTCCAGATGAACTTTGTCATGGCAGATTCGAAGCCTAATTGTTTGGTGATTGATGAAATAGATGGAGCTCTTGGTGATGGCAAGGGTGGTGTGGAGGTTATTCTAAAAGTGGCAAACTGGTTTCTATTCCTATAA 357 0.4342 MATPTNDRATNRYIHREVGEKPVKYRILLLCGPPGLGKTTLAHVAAKHCGYRVVEINASDDRSSSTIEAKILDVVQMNFVMADSKPNCLVIDEIDGALGDGKGGVEVILKVANWFLFL* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0880 118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 103 IPR027417 -
Vvi6g0880 118 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 17 112 - -
Vvi6g0880 118 Pfam ATPase family associated with various cellular activities (AAA) 28 101 IPR003959 GO:0005524|GO:0016887
Vvi6g0880 118 CDD AAA 24 113 - -
Vvi6g0880 118 Gene3D - 4 114 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0880 Vvi-Chr6 9600611 9602228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0880 26 105 Core DNA Replication Machinery Family AT5G22010 31.579 2.98e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0880 K11269 - vvi:109122741 225.713