Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0877 ATGAAGAGGAGCACGAGCTTCCGTCGAAATGAGGTTGTCGCCGATCAAGTGCCTGATCTTGAAGCCGCCGGAGAGTACAACTCCACCAAAGATAAAAGGATCCGGACGTTTGATGAAAATATGCATTCTGAACCTAAACAGAAGCGGCAGAAGGCTGGCTCAAACGTTGTTGACTACTCTGATCCATTTGCCATTCCCAATTTGCTGGAAGGTTTAGATGCTGGAAAATTTGGAAGCATGACTAAAGAAATAGAGGCCCTATGTGCTCGAAGGATGCAAATGCTTCACCCTTATTATGTGATGTATCCTTCACTTTCATATATGTCCACGGATTTGGGGAAGCAACCGAGCAAAAAGGCTTCAAAGTTGGTGAATAGACATGCCTCTCATTTGGGTCACGAAGATGTTATTGATCTGGAGGATGATCATATTGTTTATGATGTTCCAACAGCAACAGCTGTAGCAGATGCAGCATTACCTGTTGTGATTATTGATTCAGATGATGAAGAAAGTGGAGATCAGAAGGTCTCTCATCCACCACAGGAAGTGGCTTGGCCTTCTTTCTCATATCAGGAAGTTATCTTGAGAAAACCTTCTGTTGGACTTCTTGCAAATAATCCAGTGGTTAGAGATTATGTTGAGAGCATAGCTCCAAAAAAAGAAGAGAGAAGTCTGACAGCCTCCTCTGAAATCAGAAAAGATAAGGGGGGCCTGTATATTGCTGTGGGAGAGAGAAGTTTGGCGGCTAACCATGAAATGAAAAATGTTAAAGGTGAATATGTTGGTGTGGAAGATGATATGGAAGCCAGTGAGGGCAATCTTCAAGCTAAGACTAAAGATGATGATTTGGCTGATATGTGGCAAGAGTTTGATTTGGCCTTACAATCTTCAAAGGATGTTGCTGTGGATCCTGAAGAAGATGGAAAGGAAGGCGAAGAAGAATGTGAGCATTCTTTTGTTCTGAAGGATGATATTGGTTCAGTTTGTCGCATCTGTGGAGTTGTCAACAAAAGTATTGAAACCATAATTGAGTACCAGTATAGTAAGGTGAAAAGATCCAGAACTTACATGTATGAACCACGAAACACCAAAGATAGAGAGCCAACCGATGACCCTTCAGATGGACTTAGATTTTCTGAACATAGTTTAATTGTAACTGAAATCCATGCACATCCGAGGCACAGCATGCAAATGAAGCCCCATCAAGTGGAGGGCTTCAATTTTCTGGTAAGCAACTTGGTGGCAGATAATCCTGGGGGTTGCATTCTGGCTCATGCTCCAGGGTCTGGGAAAACTTTCATGATCATTAGTTTCATGCAAAGTTTCCTAGCCAAGTATCCCCAAGCCAGACCTCTTGTTGTACTTCCCAAGGGTATCTTGGCAACATGGAAAAAAGAGTTTCTGACTTGGCAAGTTGAGGATATTCCGCTGTATGACTTCTACTCTGTGAAAGCAGATAGCCGGCCTCAGCAGCTAGAGGTGTTGAAACAATGGGTGGCAGAGAAGAGCATTCTGTTTTTAGGGTACAAGCAGTTCTCCTCAATTGTTTGTGGTGATGGAGCTTCCAAGGCAGCAATGGCCTGCCAAGAAATACTGTTAAAGGCCCCTCAGATTCTTATTTTGGATGAGGGTCACACTCCAAGGAATGAGAACACTGATGTTCTGTACTCCCTTGCAAAAGTTCAAACTCCTCGGAAAGTTGTACTCTCAGGCACCCTTTATCAGAACCATGTGAAAGAGGTATTTAATATTTTGAATCTCGTTCGTCCAAAGTTTCTGAAGTTGGAAAGTTCCCGTGCTATTGTTAAGCGTATAATGAGCAAGGTGGACATCATGGGTGTGAGGAAGCAGTTGAAATCCAATGCTGCAGATGCTTTTTACGACCTGGTGGAAAACACGCTCCAGAAGGATGATAATTTCAGGAGGAAAATAACTGTGATACAAGATCTCCGTGAGATGACCAGCAAAGTTCTGCACTACTATAAAGGAGATTTCCTGGACGAGCTACCTGGACTGGTTGATTTCACAGTACTTCTCAATCTCAGTGCCAGACAGAAGAAGGAAGTCGGAAATTTGAACAAGTTTGAGAGGAAGTTCAAGAAAAATTCTGTTGGGAGTGCTGTTTATTTACACCCACAGTTGAAGTATTTTGCAGAGAAACTTGCTGCAAATGAATCTAAGACGGATGAGATGACTTATCAGAAAAAGATGGATGAGATCTTAGAGCAATTGGATGTAAGAGAAGGAGTGAAAGTAAAATTCTTCCTTAATGTGTTGGCCTTGTGTCAATCTGCAGGGGAGAAATTGTTGGTTTTCAGTCAGTACCTTCTACCACTAAGATTTTTGGAGAAATTAACCATGAAAGTGAACGGTTGGAGTTCAGGAAAAGAAATATTTGTCATCTCAGGTGAATCTAGTTCAGAGCAGCGGGAATGGTCCATGGAGCGCTTTAACACCTCTCCTGATGCAAGAGTTTTCTTTGGCTCGATTAAAGCATGTGGGGAAGGAATATCATTGGTTGGGGCATCTAGGGTTCTTATTTTGGATGTCCATCTAAACCCATCTGTTACCCGCCAGGCAATAGGCAGGGCTTTCCGTCCTGGACAAAAGAAGAAAGTGCATGTGTACAAGTTGGTTGCTGCTGATTCACCGGAAGAGGAAGACCACAATACTTGCTTCAAGAAAGAATTGATTTCAAAGATGTGGTTTGAGTGGAATGAGTACTGTGGTAACCATGAGTTTGAGGCAGAAACTGTCAATGTCAGTGACTCTGGGGATCTCTTCCTTGAAAGTCCATTGCTGAGGGAAGATGTAACAGTTTTGTACAAAAGGTAA 2835 0.4261 MKRSTSFRRNEVVADQVPDLEAAGEYNSTKDKRIRTFDENMHSEPKQKRQKAGSNVVDYSDPFAIPNLLEGLDAGKFGSMTKEIEALCARRMQMLHPYYVMYPSLSYMSTDLGKQPSKKASKLVNRHASHLGHEDVIDLEDDHIVYDVPTATAVADAALPVVIIDSDDEESGDQKVSHPPQEVAWPSFSYQEVILRKPSVGLLANNPVVRDYVESIAPKKEERSLTASSEIRKDKGGLYIAVGERSLAANHEMKNVKGEYVGVEDDMEASEGNLQAKTKDDDLADMWQEFDLALQSSKDVAVDPEEDGKEGEEECEHSFVLKDDIGSVCRICGVVNKSIETIIEYQYSKVKRSRTYMYEPRNTKDREPTDDPSDGLRFSEHSLIVTEIHAHPRHSMQMKPHQVEGFNFLVSNLVADNPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPKGILATWKKEFLTWQVEDIPLYDFYSVKADSRPQQLEVLKQWVAEKSILFLGYKQFSSIVCGDGASKAAMACQEILLKAPQILILDEGHTPRNENTDVLYSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLESSRAIVKRIMSKVDIMGVRKQLKSNAADAFYDLVENTLQKDDNFRRKITVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLNLSARQKKEVGNLNKFERKFKKNSVGSAVYLHPQLKYFAEKLAANESKTDEMTYQKKMDEILEQLDVREGVKVKFFLNVLALCQSAGEKLLVFSQYLLPLRFLEKLTMKVNGWSSGKEIFVISGESSSEQREWSMERFNTSPDARVFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFRPGQKKKVHVYKLVAADSPEEEDHNTCFKKELISKMWFEWNEYCGNHEFEAETVNVSDSGDLFLESPLLREDVTVLYKR* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0877 944 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 412 591 IPR014001 -
Vvi6g0877 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 908 IPR027417 -
Vvi6g0877 944 CDD SF2_C_SNF 751 879 - -
Vvi6g0877 944 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 37 943 IPR044567 GO:0080188
Vvi6g0877 944 SMART ultradead3 394 598 IPR014001 -
Vvi6g0877 944 SMART helicmild6 780 868 IPR001650 -
Vvi6g0877 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 609 IPR027417 -
Vvi6g0877 944 Gene3D - 371 632 IPR038718 -
Vvi6g0877 944 Pfam Helicase conserved C-terminal domain 755 867 IPR001650 -
Vvi6g0877 944 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 754 922 IPR001650 -
Vvi6g0877 944 Pfam SNF2-related domain 416 617 IPR000330 GO:0005524|GO:0140658
Vvi6g0877 944 Gene3D - 670 931 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0877 Vvi-Chr6 9418254 9427173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0877 765 886 RAD5 or RAD16-like Gene Family AT1G11100 36.885 8.57e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi6g0877 SNF2_N 5.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0877 K10875 - vvi:100260281 1857.42