Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0871 ATGGCTTTAAAACAAAGGGGCATCAGAGCCGAGTTTCTTGCTTCTGCTCAAACTGATCCCACCGTCCACAAAAATGCAGAGAGTGGTACATTTCATGTTTTGTTCATGACCCCAGAAAAGGCTTGCTCCATTCCTGGCAGCTTCTGGTCAAAGTTACTAAAGGTGGGGATTTGTCTGTTTGCTGTTGATGAAGCACATTGCATATCTGAGTGGGGCCATGATTTCAGGATGGAATACAAACAGTTAGACAAGTTACGTGCTATTCTTCTAGATGTTCCATTTGTTGGCTTAACTGCAACTGCTACCAAAAAGGTTCGGATGGACATTATTAATTCTCTAAAGATGAGAGATCCTAATGTTTTCATTGGATCCTTTGATCGTAAGAATCTCTTCTATGGAGTCAAATCTTTTATTCGCAATTCCCAATTTATGGATGAGTTTGTGGGGGAAATCTCAAAATTTGTGGCTAGTTCTGACTCTACCATTATATATTGTACAACAATCAAAGATGTTGAGCAGATTTACAAGTCACTTCAGGAGGCTGGAATAAAGGCTGGCATTTATCATGGTCAAATGGCTAATAGTGCTCGTGAAGAATCCCACAGAATTTTTATAAGAGATGAAGTACATGTCATGGTTGCCACTATTGCTTTTGGAATGGGTATTGATAAACCAAATATAAGGCATGTCATTCACTATGGTTGCCCGAAGAGTCTTGAGTCCTATTATCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTCTGCTGGCTTTATTATAATAGAGGTGACTTCATGAAAGCAGATTTCTACTGCGGAGAAGCCACAGGAAATCAAAGAAGAGCTATTATGGACTCACTGGTGGCTGCACAGAACTATTGCTTACAGACAACCTGCCGAAGAAAGTTCTTGCTGGAGTATTTTGGGGAAAAATTTGAGTCTGATAAATGTGGGAATTGTGATAATTGCACCATCTCAAAAAGGGAGTGTGACATGTCTAGAGAAGCATTTCTTTTAATCGCGTGCATCAACTCCTGTAGGGGTCATTGGGGCCTCAACATGCCTATTGACATTCTTCGTGGATCTCGATCAAAAAGAATTCTTGACGCTAAGTTTGACAAGCTTCCGCTTCATGGCCTCGGGAAAGACCACTCATCAAATTGGTGGAAAGCACTAGCTTACCAATTGATTTCTTATGGTACCATAAGTGAAAGATTAGCACTAAAAAATTTTAGTTATCTGATGGAGTCTGTTAAGGATGTATATAAAACCGTAAGTGTCAGTCAAAAAGGAGCTCAATTTCTCAGTTCCTCAACACCTGCTCATCAACCAAAATTAGTTTTGCAAGTGACTAATGAAATGGTTGATGATGAGGAGCATGAAGGCACATCAGGCAAATTTGGAGAGTTGAAAGGTTTGGCTACATTTGAATATGAAGGATTTTCAGAGACTGAGGGACAACTCTATCATATGCTTCTAGACGAGAGAATGAAGTTTGCAAGAGGCATTGGAACTGCTCCATATGCCATATGTGGTAATGAAACAATTAAGAAGATCGCACTGATAAGGCCATCTACTAAAGCTAGGTTAGCAAACATCGATGGTGTCAACCAGGCAAATGAGAAAATGTATTAA 1641 0.3998 MALKQRGIRAEFLASAQTDPTVHKNAESGTFHVLFMTPEKACSIPGSFWSKLLKVGICLFAVDEAHCISEWGHDFRMEYKQLDKLRAILLDVPFVGLTATATKKVRMDIINSLKMRDPNVFIGSFDRKNLFYGVKSFIRNSQFMDEFVGEISKFVASSDSTIIYCTTIKDVEQIYKSLQEAGIKAGIYHGQMANSAREESHRIFIRDEVHVMVATIAFGMGIDKPNIRHVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYNRGDFMKADFYCGEATGNQRRAIMDSLVAAQNYCLQTTCRRKFLLEYFGEKFESDKCGNCDNCTISKRECDMSREAFLLIACINSCRGHWGLNMPIDILRGSRSKRILDAKFDKLPLHGLGKDHSSNWWKALAYQLISYGTISERLALKNFSYLMESVKDVYKTVSVSQKGAQFLSSSTPAHQPKLVLQVTNEMVDDEEHEGTSGKFGELKGLATFEYEGFSETEGQLYHMLLDERMKFARGIGTAPYAICGNETIKKIALIRPSTKARLANIDGVNQANEKMY* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0871 546 Pfam RQC domain 330 437 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vvi6g0871 546 Gene3D - 127 327 IPR027417 -
Vvi6g0871 546 Pfam RecQ zinc-binding 266 326 IPR032284 -
Vvi6g0871 546 SMART RQC_2 333 449 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vvi6g0871 546 FunFam ATP-dependent DNA helicase 127 327 - -
Vvi6g0871 546 Gene3D - 1 125 IPR027417 -
Vvi6g0871 546 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 119 IPR014001 -
Vvi6g0871 546 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 541 - -
Vvi6g0871 546 SMART helicmild6 172 253 IPR001650 -
Vvi6g0871 546 Pfam Helicase conserved C-terminal domain 153 252 IPR001650 -
Vvi6g0871 546 CDD SF2_C_RecQ 127 262 - -
Vvi6g0871 546 ProSiteProfiles HRDC domain profile. 484 546 IPR002121 GO:0003676
Vvi6g0871 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 122 IPR027417 -
Vvi6g0871 546 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 150 305 IPR001650 -
Vvi6g0871 546 FunFam ATP-dependent DNA helicase 328 464 - -
Vvi6g0871 546 NCBIfam RecQ family ATP-dependent DNA helicase 2 385 IPR004589 GO:0004386|GO:0006310
Vvi6g0871 546 SUPERFAMILY HRDC-like 483 545 IPR010997 GO:0000166|GO:0044237
Vvi6g0871 546 Gene3D HRDC domain 483 546 IPR044876 -
Vvi6g0871 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 372 IPR027417 -
Vvi6g0871 546 Gene3D - 328 466 IPR036388 -
Vvi6g0871 546 Pfam HRDC domain 489 541 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0871 Vvi-Chr6 9334045 9362195 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0871 60 253 Eukaryotic Initiation Factors Gene Family AT5G11170 23.858 1.53e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0871 K03654 - vvi:100262056 1070.07