Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0863 ATGGCGGGCGTTGCTTCTTGCTCAAGGTTGTTTTCGGGAAATTCAAAGCGCTTTTTGTTACGCTATTCTCATCGTAATAATTCAACTATCAATATCTGCAATGGAAGAGAATTGGGAATCGCTCGCAACCTCAACATCACCAGAAGGATCCATTTTTTTAGACATTTGAACAGCTTTCTATCGGATTCGCCTCCCTCCTATCGACCACCTTCCCCTTACCACCGACACCCTAGTTGGACGCTCAAAGGATACGCACTCTTCTCCACATCTACTGCTGGTGATGTAACGGCAACAAAACAGGTTGGAAAGAAAAATCAAGCAAAAGTTGTTTCGGATGAACATGCCGCTGATATGAAAATCCTCCGCACTCTTGCTAAGTACTTATGGTCGAAAGACAACCCGGAATTCCGTTTCAGGGTGATTATGGCCTTGGGTTTCTTGGTTGGGGCTAAGGTTCTAAATGTCCAGGTGCCTTTTTTATTCAAGCTTGCTGTTGATTGGTTAACGACCACAACTGGAAATGCTACTGCTCTTGCTTCCTTTACTACTGCTAATTCAACTGCTTTGGCTTTATTTGTGAGCCCAGCTGCTGTTTTAGTTGGATATGGGATAGCTCGTTCTGGGGCTTCTGCTTTTAATGAATTGCGGACCGCTGTGTTCTCTAAGGTGGCATTGCGAACAATTCGATCAGTATCCAGGAGGGTGTTTTCGCATTTGCATGATCTTGATCTTCAGTATCATCTGAGTCGAGAGACAGGTGCACTAAATCGAATAATTGATCGGGGTAGCCGTGCAATTAACTTTATTCTCTCATCAATGGTATTCAATATTGTACCTACCATCTTAGAGATTTCGATGGTAGCAGGTATTCTAGCATACAAATTCGGAGCATCTTTTGCATGGATAACTTCGCTATCAGTTGCTGCATATGTTGCTTTCACATTAGCTGTAACACAGTGGAGAACTAAATTTAGGAAGATCATGAATAAAGCCGATAATGATGCAAGTACAAGGGCAATTGATTCACTTATCAATTATGAGACTGTGAAATATTTCAACAGTGAAGCTTTTGAAGTTGAGAAGTATGATGAACTCCTAAAGAGGTATGAAGATGCTGCCTTAAAAACGCAACGCAGTCTTGCTTTTTTGAACTTTGGCCAAAACTTAATATTTAGCACCGCCCTATCAACAGCTATGGTGTTATGTTCACATGGGATTATGAATGGCGAGATGACAGTTGGTGATTTGGTTATGGTGAATGGGCTTCTATTTCAGCTATCTCTTCCACTCAACTTTCTCGGCAGTGTGTATCGTGAAACTATACAAAGTCTTGTTGACATGAAATCCATGTTTCAATTACTTGAGGAGAGGCCTGATATTAGGAATGCAGATGATGCAAAGCCTTTGAAGTTAAGTGGGGGGAGCATTCAATTTAGCAATGTACACTTCAGCTACCTGACAGAGAGAAAAATTCTTGATGGAATATCTTTTGTTGTACCAGCTGGAAAAAGTGTGGCTATTGTTGGAACCAGTGGCAGTGGCAAATCAACCATTCTTAGATTGCTTTTCAGGTTTTTTGACGCTCAATGTGGAACTATATGTATAGATGGAGAAGATATTCGAAAGGTTACTCTTGAAAGTCTTCGAAAATCTATTGGTGTTGTGCCGCAGGATACAGTACTTTTCAATGATACAATATTCCACAACATTCAGTATGGTCGTCTTTCAGCAACCAACGAGGAGGTGTATGATGCTGCTCGACGTGCAGCAATTCATGACACTATCATGAATTTCCCTGAGAAATATTCAACTGTTGTGGGAGAACGGGGGCTCAAGTTAAGTGGTGGTGAGAAGCAGCGCGTGGCGCTAGCTCGTGCATTCTTGAAAGCACCTGCCATTCTACTTTGTGATGAAGCTACGAGTGCACTAGACAGCACAACAGAGTCAGAGATATTAAATGCACTGAAGACATTAGCAAATAATCGAACTTCAATCTTTATAGCACATAGACTTACAACTGCGATGCAGTGTGACGAGATTATTGTTCTGGAGAACGGGACGGTGATTGAACAGGGACCACATGAAGTTCTATTGTCGAAGGCAGGAAGATATGCTCAGCTGTGGGGCCAGCAAAATAATTCTCCTGACGGAGTCGATCCCACCATTAAATTGGAGGCGTGA 2181 0.4214 MAGVASCSRLFSGNSKRFLLRYSHRNNSTINICNGRELGIARNLNITRRIHFFRHLNSFLSDSPPSYRPPSPYHRHPSWTLKGYALFSTSTAGDVTATKQVGKKNQAKVVSDEHAADMKILRTLAKYLWSKDNPEFRFRVIMALGFLVGAKVLNVQVPFLFKLAVDWLTTTTGNATALASFTTANSTALALFVSPAAVLVGYGIARSGASAFNELRTAVFSKVALRTIRSVSRRVFSHLHDLDLQYHLSRETGALNRIIDRGSRAINFILSSMVFNIVPTILEISMVAGILAYKFGASFAWITSLSVAAYVAFTLAVTQWRTKFRKIMNKADNDASTRAIDSLINYETVKYFNSEAFEVEKYDELLKRYEDAALKTQRSLAFLNFGQNLIFSTALSTAMVLCSHGIMNGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEERPDIRNADDAKPLKLSGGSIQFSNVHFSYLTERKILDGISFVVPAGKSVAIVGTSGSGKSTILRLLFRFFDAQCGTICIDGEDIRKVTLESLRKSIGVVPQDTVLFNDTIFHNIQYGRLSATNEEVYDAARRAAIHDTIMNFPEKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTESEILNALKTLANNRTSIFIAHRLTTAMQCDEIIVLENGTVIEQGPHEVLLSKAGRYAQLWGQQNNSPDGVDPTIKLEA* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0863 726 CDD ABCC_ATM1_transporter 476 711 - -
Vvi6g0863 726 FunFam ATP-binding cassette sub-family B member 7 112 464 - -
Vvi6g0863 726 Pfam ABC transporter transmembrane region 140 429 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi6g0863 726 Gene3D - 467 719 IPR027417 -
Vvi6g0863 726 FunFam ABC transporter B family member 25 468 722 - -
Vvi6g0863 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 711 IPR027417 -
Vvi6g0863 726 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 111 707 IPR039421 -
Vvi6g0863 726 ProSitePatterns ABC transporters family signature. 613 627 IPR017871 GO:0005524|GO:0016887
Vvi6g0863 726 Gene3D ABC transporter type 1, transmembrane domain 127 465 IPR036640 GO:0005524|GO:0016020
Vvi6g0863 726 SMART AAA_5 501 687 IPR003593 GO:0016887
Vvi6g0863 726 SUPERFAMILY ABC transporter transmembrane region 125 459 IPR036640 GO:0005524|GO:0016020
Vvi6g0863 726 Pfam ABC transporter 492 641 IPR003439 GO:0005524
Vvi6g0863 726 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 476 710 IPR003439 GO:0005524
Vvi6g0863 726 CDD ABC_6TM_ATM1_ABCB7 143 450 - -
Vvi6g0863 726 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 141 442 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0863 Vvi-Chr6 9155756 9213255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0863 322 718 Calmodulin-binding Proteins AT2G36910 36.341 3.03e-63 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0863 K05662 - vvi:100243299 1385.93