Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0858 ATGGAGACGTCTGGTAGCAATTCAAGATACGGAATCCATATCGCTGCTTCCAACTTCATCCAGGCGCCATTGGCGGCGCTTTTGGAGTATTCTGGTATTTTCAGCACCAGGTCTTCTTCTTCTCAGGAAACCGACGGCTTGATTGCTCCTTCACCTGCTTCACTCGATAGCTTCCACTCCCGCTCCGACGATCGCGATCGCGATCACGATCCGTCGACTCCTGCCTCCACTCCTGAGGAGGTTTCCATTAGGATTATCGGTGCTGGAGAGCAAGAGCGAGAAGCCGTTTCTCTTGACAATGACCGTTCTTCATCGGAGCAAATTTCTGAGGCTCCCGCCGTTTCGGACGCTAGCAGGAATGAAAGTGGGAGTGGTGTAGCGGCTGTTAATTCTGGCGGGTCAACTGCCGATGGGGAGCCTGCCAATGGGGGCAGTGTTAATAACAGGGATTCTTCTTATCAGAGATACGATATTCAGCAATTTGCCAGATGGATCGAGCAGATTCTTCCATTTTCTTTGCTTTTATTGGTTGTTTTCATCAGACAACATTTGCAAGGTTTCTTTGTTACGATTTGGATTGCTGCAGTCATGTTTAAATCAAATGATATTCTACGAAAGCAGACAGCTCTAAAGGGGGAAAGAAAATTATCTGTTCTCACGGGCATCACTGCAGTGTTTATGCTTCATGTTATCTGTGTTTATTGGTGGTATCGGAATAATGACCTTCTATACCCTCTGGTTTTGCTTCCTCCAAAAGCAATACCTCCATTCTGGCATGCTATTTTCATCATCATGGTGAATGATACAATGGTGCGTCAAGCAGCAATGGCTTTAAAGTGCATACTTTTGATGTATTACAAAAATAGTAGAGGCCGTGATTATCGTAAACAGGGTCAGATGCTAACTCTTGTTGAGTATCTGTTGTTGCTGTACCGTGCCTTGTTGCCTACACCAGTCTGGTATCGGTTCTTTTTGAACAAAGAATATGGAAGCCTCTTTTCTTCATTGACTACAGGGTTGTATTTAACTTTTAAGCTTACATCAGTTGTTGAGAAGGTTCAATCCTTCTTTGCTGCATTGAGGGCCTTATCGCGTAAGGAGGTGCATTATGGGTCTTATGCCACATCTGAACAGGTTAATGCAGCAGGGGATCTCTGTGCTATATGCCAGGAGAAGATGCATGCTCCGATTTTGCTTCGGTGTAAACACATATTTTGTGAAGACTGTGTATCAGAATGGTTTGAGCGAGAGAGGACATGCCCATTGTGCAGGGCCTTGGTTAAACCTGCTGATATCAGATCATATGGTGATGGATCGACTAGTCTGTTTTTCCAGATATTTTAG 1344 0.4479 METSGSNSRYGIHIAASNFIQAPLAALLEYSGIFSTRSSSSQETDGLIAPSPASLDSFHSRSDDRDRDHDPSTPASTPEEVSIRIIGAGEQEREAVSLDNDRSSSEQISEAPAVSDASRNESGSGVAAVNSGGSTADGEPANGGSVNNRDSSYQRYDIQQFARWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNDILRKQTALKGERKLSVLTGITAVFMLHVICVYWWYRNNDLLYPLVLLPPKAIPPFWHAIFIIMVNDTMVRQAAMALKCILLMYYKNSRGRDYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLTTGLYLTFKLTSVVEKVQSFFAALRALSRKEVHYGSYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADIRSYGDGSTSLFFQIF* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0858 447 ProSitePatterns Zinc finger RING-type signature. 401 410 IPR017907 -
Vvi6g0858 447 MobiDBLite consensus disorder prediction 101 149 - -
Vvi6g0858 447 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 8 447 IPR044235 GO:0061630|GO:1904294
Vvi6g0858 447 CDD RING-HC_RNFT1-like 384 424 - -
Vvi6g0858 447 ProSiteProfiles Zinc finger RING-type profile. 386 424 IPR001841 -
Vvi6g0858 447 Pfam Zinc finger, C3HC4 type (RING finger) 384 427 - -
Vvi6g0858 447 SUPERFAMILY RING/U-box 379 429 - -
Vvi6g0858 447 MobiDBLite consensus disorder prediction 38 149 - -
Vvi6g0858 447 MobiDBLite consensus disorder prediction 58 74 - -
Vvi6g0858 447 SMART ring_2 386 423 IPR001841 -
Vvi6g0858 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 434 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0858 Vvi-Chr6 9099736 9118776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0858 5 447 C3H Transcription Factor Family AT5G01960 68.172 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0858 - K22379 vvi:100260395 849.736