Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0855 ATGGCGGCCGCCAGCTCTTATGAAGAGGCTCGCAAGCAGCACCTTGAAGAAAATAAAAAACGGCTTGAAGATTTGGGGATTTTGAAAATTTCACAGAGTTTATCACTTCTCACCAATTCTAACAGCAAGTCTCAGAAGCGTCCCCCAAAGCCTAAGCCGGAGAGCGTTTACATGTTGGAGCCAAGACGCTCTTCACGGGTCCGCAACTCTGTTGCTTCATATTGCGACGAAGTTGACATAAGCCTTCGACCTTTGCGAAAAAGGTCAAAGTTAAATTCATCATGGGCAAGCTATCTTGCAAGGCCATTGAATGAAGTTATAACTGCTTCTTATGAAGAAAGGGTTCATGCTATCAAGGCTGCAGAGGAGATCCAAAGCAATCTACAGTCTGGAAATCCATCTTTTGTCAAATCAATGGTTCGATCTCATGTTTATAGCTGTTTTTGGCTGGGGCTTCCTTCCAAGTTTTGCGAGGACCATCTACCAAAAACGTTATTGGACATGGTATTAGAAGATGAGAATGGTACAGAATATGGGGCCGTCTATATAGGCAAGAGGACTGGGCTTAGTGGTGGTTGGAGAGGATTTGCACTAGATCATAAACTGGATGATGGTGATGCTTTAGTATTTGAATTGATTGAGCCAGCAAGATTCAAGGTTTATATAGTGAGAGCATCAGAAGTTTCAAGTAAAAAAAATGATGCGGATGTAGATGAAGTACATAGTGCTGCTAAAAGGAGATCAAAGCGAGCTACAAGGTTAAATAAATGCAATGAATCTGAACCAAAACAGGATCGAAAATCAACCCAAAAAGTAATTGAAAGTAGTGAGTCAACGGTCCATCAGGGGGGTGGAGTGAAAAATGAAGACGAGTTAGAGGATGTAAATGCGACCGAAGGGCCTAGAAAGAGAATCACCCGTTCAAAGCGTCTGACTAAGAAATTATCTTGA 951 0.4217 MAAASSYEEARKQHLEENKKRLEDLGILKISQSLSLLTNSNSKSQKRPPKPKPESVYMLEPRRSSRVRNSVASYCDEVDISLRPLRKRSKLNSSWASYLARPLNEVITASYEERVHAIKAAEEIQSNLQSGNPSFVKSMVRSHVYSCFWLGLPSKFCEDHLPKTLLDMVLEDENGTEYGAVYIGKRTGLSGGWRGFALDHKLDDGDALVFELIEPARFKVYIVRASEVSSKKNDADVDEVHSAAKRRSKRATRLNKCNESEPKQDRKSTQKVIESSESTVHQGGGVKNEDELEDVNATEGPRKRITRSKRLTKKLS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0855 316 MobiDBLite consensus disorder prediction 284 305 - -
Vvi6g0855 316 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 46 232 IPR044837 -
Vvi6g0855 316 Pfam B3 DNA binding domain 135 225 IPR003340 GO:0003677
Vvi6g0855 316 CDD B3_DNA 133 224 IPR003340 GO:0003677
Vvi6g0855 316 SMART B3_2 135 226 IPR003340 GO:0003677
Vvi6g0855 316 Gene3D - 110 228 IPR015300 -
Vvi6g0855 316 MobiDBLite consensus disorder prediction 233 316 - -
Vvi6g0855 316 ProSiteProfiles B3 DNA-binding domain profile. 135 226 IPR003340 GO:0003677
Vvi6g0855 316 MobiDBLite consensus disorder prediction 253 272 - -
Vvi6g0855 316 MobiDBLite consensus disorder prediction 38 63 - -
Vvi6g0855 316 SUPERFAMILY DNA-binding pseudobarrel domain 129 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0855 Vvi-Chr6 9077586 9080946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0855 4 227 B3 DNA Binding Superfamily AT5G58280 50.198 1.90e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi6g0855 B3 2.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0855 - - vvi:100250145 590.112