Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0853 ATGTTTGATAATTCTGGTTACTTTTGCATTCAATCAAGAGTTTGGATGATTGAAGCCGTTCTGTTAGTGTGGTTATGTTGGTCTTCATCATTCATCGGAGCAAAGGCTACGGTTACCGACCCTGTCGAAGTGACGGCATTGCGGGCAATCAAGGAAAGTTTGGAAGATCCCATGAATAATTTGACTAATTGGAATCGAGGTGATCCATGTACATCGGAGTGGACAGGGGTTTTGTGCTTCAATACAACAATGAATGATAGCTATCTTCATGTTAAAGAATTGCAATTACTGAATATGCATCTGTCGGGAACTCTGTCGCCGGAGCTTGGCCGCTTATCTTATATGCAAATATTGGATTTTATGTGGAACAACATAACTGGGAGCATTCCAAAGGAGATAGGAAACATTACAACTTTAGAACTCTTGCTCCTGAATGGCAACAAGTTAACAGGTTCTTTACCAGAAGAGCTCGGTAATCTTCCGAACTTGGACAGAATACAGATTGACCAGAACCAAATATCAGGATCAATTCCTAGATCTTTTGCGAACTTGAATAAAACAAAGCACTTTCACATGAACAACAATTCAATTAGTGGGCAAATTCCATCCGAGCTCTCCAGATTGCCAGAACTTGTTCACTTTCTGCTTGACAATAACAACCTATCAGGATATCTTCCACCAGAATTCTCTGAAATGCCAAAGTTACTTATAGTTCAGCTCGACAACAACCACTTCAACGGGAGTATTCCAGCTTCTTACAGCAACATGTCTAAATTGTTGAAGTTGAGCCTCAGAAACTGCAGCTTGCAAGGAGAAATTCCCAACTTGAGCAAGATACCATATCTTGGTTATTTAGACCTCAGTTCGAACCAGCTTAATGGAACCATACCTCCTGGTAGATTTTCTGAGAATATTACAACGATAGATCTTTCTAACAACAATCTTACTGGAACAATTCCTGCGAACTTTTCGGGTCTTCCTCATCTACAAAAATTGTCACTGGAAAACAATTCATTGAGTGGTACTGTTTCATCCAGTATTTGGCAAAACAGGACTTCGAATGGAAATGAGACATATGTTGTGGATTTTCAGAATAATGATCTTTCAAATATTTCAGGCACTCTTGACCTTCCTCTCAATGTCACCGTCAGGCTTTATGGGAATCCCTTGTGCACAAACGAGAGCCTAGTTCAGTTCTGTGGATCTCAAAGTGAGGAGGAAAATGACACGCTTAACCCAGTAAACTCCACTGTTGATTGTACCGCCGTACGTTGCCCACTGTATTATGAAATTTCCCCAGCATCTCTCGAGATTTGTTTATGTGCTGCACCTCTTCTTGTTGGATATCGATTGAAAAGTCCTGGATTTTCTAATTTTCTCGCATACCAGAATATGTTTGAGTATTACCTTACCAGTGGTCTCAGCTTGAATCTTGATCAGCTGAAGATTGATTCAGTAGAATGGGAAAAAGGCCCTCGATTGAAAATGTACTTTAAACTTTTCCCTGACGATGTGAACAATTCCTCCGAGTTCAATAGCAGTGAGGTTCTACGAATCAGGGGCATGTTCACAGGATGGAACATTCCAGATAGTGACGTATTTGGACCTTATGAACTGATCAACTTCACGCTTACGGACATTTATAAGGATGTGATTGGCAGCTCTTCATCATCTGGTATAAGCACGGGGGCACTGGTTGGCATTATCCTGGGGACCATTGCAGTTGCAGTTACATTATCTGCAATTGTTTTTCTTCTTATCTTGAAAAACCGTTTGAAGAAATACCATACAATTTCAAGAAGACGTAAATCTACCAGGATCTCAATCAAAATTGATGGTGTGAAAGACTTCACTTACGGAGAAATGGCACTGGCTACAAACAATTTTAATGACTCTGCTGAAGTTGGCCAAGGAGGGTATGGAAAGGTCTATAAAGGTATTCTAGCTGATGGTACAGTTGTGGCTATAAAACGTGCACAAGAGGGATCACTGCAAGGTCAGAAGGAGTTCTTTACAGAAATAGAGTTATTATCAAGGGTACATCACCGAAACCTTGTGTCGTTGATTGGATATTGTGATGAAGAAGGTGAACAGATGTTGGTTTATGAATTCATGCCTAATGGCACATTGAGAGATCACCTTTCTGCTGCTAAATCTAAAGAACCTCTGAGTTTTGCAATGAGATTGAGCATTGCATTGGGTTCATCCAAGGGCATCCTTTACCTACATACTGAAGCCAACCCTCCAATATTCCACCGAGATGTCAAGGCAAGCAACATATTATTGGACTCTAAATTTATTGCAAAGGTTGCGGATTTTGGACTTTCAAGACTTGCCCCAGTTCCAGATATTGAAGGAAGTACACCAGCTCATGTATCTACAGTGGTAAAAGGAACTCCGGGATACCTTGATCCAGAATACTTCTTGACTCATAAGCTCACTGACAAGAGTGACGTTTATAGCCTTGGTGTTGTATTCCTAGAGCTCCTGACAGGGATGCATCCAATCTCACATGGCAAGAATATTGTTCGAGAGGTAATGCTAGTTCTTTACCAACTAATTTTAGTTGAGAGTTTGGTCTAA 2583 0.4061 MFDNSGYFCIQSRVWMIEAVLLVWLCWSSSFIGAKATVTDPVEVTALRAIKESLEDPMNNLTNWNRGDPCTSEWTGVLCFNTTMNDSYLHVKELQLLNMHLSGTLSPELGRLSYMQILDFMWNNITGSIPKEIGNITTLELLLLNGNKLTGSLPEELGNLPNLDRIQIDQNQISGSIPRSFANLNKTKHFHMNNNSISGQIPSELSRLPELVHFLLDNNNLSGYLPPEFSEMPKLLIVQLDNNHFNGSIPASYSNMSKLLKLSLRNCSLQGEIPNLSKIPYLGYLDLSSNQLNGTIPPGRFSENITTIDLSNNNLTGTIPANFSGLPHLQKLSLENNSLSGTVSSSIWQNRTSNGNETYVVDFQNNDLSNISGTLDLPLNVTVRLYGNPLCTNESLVQFCGSQSEEENDTLNPVNSTVDCTAVRCPLYYEISPASLEICLCAAPLLVGYRLKSPGFSNFLAYQNMFEYYLTSGLSLNLDQLKIDSVEWEKGPRLKMYFKLFPDDVNNSSEFNSSEVLRIRGMFTGWNIPDSDVFGPYELINFTLTDIYKDVIGSSSSSGISTGALVGIILGTIAVAVTLSAIVFLLILKNRLKKYHTISRRRKSTRISIKIDGVKDFTYGEMALATNNFNDSAEVGQGGYGKVYKGILADGTVVAIKRAQEGSLQGQKEFFTEIELLSRVHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDHLSAAKSKEPLSFAMRLSIALGSSKGILYLHTEANPPIFHRDVKASNILLDSKFIAKVADFGLSRLAPVPDIEGSTPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVMLVLYQLILVESLV* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0853 860 Pfam Leucine rich repeat 161 221 IPR001611 GO:0005515
Vvi6g0853 860 Pfam Leucine rich repeat 281 339 IPR001611 GO:0005515
Vvi6g0853 860 ProSitePatterns Protein kinases ATP-binding region signature. 635 657 IPR017441 GO:0005524
Vvi6g0853 860 Gene3D Ribonuclease Inhibitor 42 195 IPR032675 -
Vvi6g0853 860 ProSiteProfiles Protein kinase domain profile. 629 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0853 860 Gene3D Phosphorylase Kinase; domain 1 599 704 - -
Vvi6g0853 860 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 301 429 - -
Vvi6g0853 860 SUPERFAMILY Protein kinase-like (PK-like) 605 842 IPR011009 -
Vvi6g0853 860 Gene3D Transferase(Phosphotransferase) domain 1 705 853 - -
Vvi6g0853 860 Pfam Protein kinase domain 630 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0853 860 FunFam Leucine-rich repeat protein kinase family protein 593 704 - -
Vvi6g0853 860 Pfam Leucine rich repeat N-terminal domain 43 79 IPR013210 -
Vvi6g0853 860 Gene3D Ribonuclease Inhibitor 299 427 IPR032675 -
Vvi6g0853 860 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672|GO:0006468
Vvi6g0853 860 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 200 300 - -
Vvi6g0853 860 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 41 199 - -
Vvi6g0853 860 SUPERFAMILY L domain-like 53 400 - -
Vvi6g0853 860 Gene3D Ribonuclease Inhibitor 196 298 IPR032675 -
Vvi6g0853 860 SMART serkin_6 629 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0853 860 PANTHER RECEPTOR-LIKE PROTEIN 55 47 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0853 Vvi-Chr6 9055378 9070223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0853 17 846 Receptor kinase-like Gene Family AT5G01950 61.263 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vvi6g0853 Pkinase 6.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0853 - - vvi:100245012 1659.43