Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0849 ATGAATGTTCATGTTCAGGGCTTCTTTCTTTTGAATTTTCATAGCCCAAATGATTCAACTAATATTTGTTTCAGACTCTGTGTGGATCTTTGGCACTTTGTTTTGACATTCTACACTTTGTCTTCTGGAGAACAGAAAGGGCTAAAGATGGTACAATTTTACTACTACGGTCACTCTCATATACCCTGTGCCAGACAACTTCCCATGAAGCTCTTTTCCACTTCTTTGGTTCTGCTTTTCCTTTTTGTGATAGCCATTCTTCTTCCTCTGGCAATTGCTGATCTGGATGCTGACAAGCAAGCCCTTCTTGACTTTGCTGATGCTGTTCCCCATCGCAGAAAACTCAACTGGAATTCTTCTACCCCAGTATGTACCTCATGGGTGGGCATCAATTGCACTGGTGATGGCAGCCGTGTGCGTGCCCTCCGGCTCCCTGGCATCGGACTTACTGGATCCATCCCAGCTACCACTCTTGGGAAGCTAGATGCCCTCGAGATTCTCAGCCTTCGATCCAATCTCCTCACTGGGAAGCTTCCCTCTGACATCCCCTCCCTTCCTTCCCTCCAGTATCTCTTCCTTCAACATAATAACTTCTCAGGTGATATTCCTGCCTCATTTTCTCCCCAACTCACTGTACTGGATCTCTCATTTAATTCCTTCACTGGCAACATTCCACTAACAATTTGGAATTTGACGCAACTCACTGGATTGAACCTCCAGAACAACAGCCTTTCTGGAGCCATACCTGATGTCAACCCCTCAAAACTCAAGCATTTGAACTTAAGCTACAATAATCTTAATGGTTCTATCCCATCTTCCCTTCAAAGATTCCCCAATTCTTCATTTGTAGGAAACTCTCTATTATGTGGACCTCCTCTGAATAATTGCTCCCTCACCCCCCTTTCACCTTCTCCTGCTCCTAGCTTCCCATCCCCACCAATGGCCTCTGAAAAACAAGGCTCCAAAAAGAAACTCAGTATGGGGATTATCATTGCCATTGCTGTTGGAGGGGCTGTGGTGCTGTTTCTTGTAGTTCTGATGATCTTCCTGTGCTGTTTGAGGAAAAAAGATAGTGAGGGCAGTGGTGTGGCGAAAGGGAAGGCTTCTGGTGGTGGCAGGAGTGAGAAACCCAAGGAGGAGTTTGGGAGTGGAGTGCAAGAGCCGGACAAAAACAAGCTGGTCTTCTTTGAAGGCTGTTCTTATAATTTTGATCTTGAGGATTTATTAAGGGCTTCAGCTGAAGTGCTGGGGAAAGGAAGTTATGGGACAGCATATAAGGCTGTCTTGGAGGAATCAACTACAGTAGTAGTGAAAAGATTGAAGGAAGTTGTGGTGGGAAAGAGGGATTTTGAACAGCAGATGGATATTGTGGGAAGGGTAGGGCAGCACCCAAATGTTGTGCCACTCCGTGCTTATTATTACTCCAAGGATGAGAAGCTCCTGGTTTATGACTATGTCTCAGGTGGCAGCTTATCGGCACTGTTGCATGGAAACAGGCCTACTGGACGATCTCCACTGGACTGGAATGCAAGAGTGAAGATCTCTCTTGGAATTGCAAGGGGAATCACCCACATTCACTCTGTAGGTGGTGGAAAGTTCACTCATGGAAATATCAAGTCCTCAAACGTTCTTCTGAACCAAGACTTTGAGGGGTGCATCTCTGATTTTGGCCTAACTCCTCTCATGAACTTCCCCGCCACCTCTTCTCGAAATGCAGGCTACCGTGCTCCTGAGGTGATTGAAAGCCGAAAGCACACTCATAAATCCGATGTTTACAGCTTTGGTGTCCTCCTACTTGAGATGCTGACTGGCAAAGCTCCACTCCAATCTCCAGGGCGAGATGACATGGTTGATCTCCCAAGGTGGGTCCAGTCTGTTGTCCGGGAGGAATGGACAGCTGAGGTTTTTGACATTGAGCTAATGAGGTATCAAAACATAGAAGAAGAGATGGTGCAGATGCTGCAACTTGCCATGGCCTGTGTGGCAAAGGTGCCTGATATGCGACCTAGCATGGATGAAGTTGTTAGAATGATCGAAGAGATCCGGCAATCTGACTCAGAGAACCGGCCATCTTCTGAAGAGAACAAGTCCAAGGACTCAAATGTGCAAACCCCATGA 2118 0.4651 MNVHVQGFFLLNFHSPNDSTNICFRLCVDLWHFVLTFYTLSSGEQKGLKMVQFYYYGHSHIPCARQLPMKLFSTSLVLLFLFVIAILLPLAIADLDADKQALLDFADAVPHRRKLNWNSSTPVCTSWVGINCTGDGSRVRALRLPGIGLTGSIPATTLGKLDALEILSLRSNLLTGKLPSDIPSLPSLQYLFLQHNNFSGDIPASFSPQLTVLDLSFNSFTGNIPLTIWNLTQLTGLNLQNNSLSGAIPDVNPSKLKHLNLSYNNLNGSIPSSLQRFPNSSFVGNSLLCGPPLNNCSLTPLSPSPAPSFPSPPMASEKQGSKKKLSMGIIIAIAVGGAVVLFLVVLMIFLCCLRKKDSEGSGVAKGKASGGGRSEKPKEEFGSGVQEPDKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVGKRDFEQQMDIVGRVGQHPNVVPLRAYYYSKDEKLLVYDYVSGGSLSALLHGNRPTGRSPLDWNARVKISLGIARGITHIHSVGGGKFTHGNIKSSNVLLNQDFEGCISDFGLTPLMNFPATSSRNAGYRAPEVIESRKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDIELMRYQNIEEEMVQMLQLAMACVAKVPDMRPSMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0849 705 MobiDBLite consensus disorder prediction 371 385 - -
Vvi6g0849 705 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 486 693 - -
Vvi6g0849 705 MobiDBLite consensus disorder prediction 359 385 - -
Vvi6g0849 705 Pfam Leucine Rich Repeat 255 276 IPR001611 GO:0005515
Vvi6g0849 705 PANTHER OS05G0588300 PROTEIN 78 693 - -
Vvi6g0849 705 Pfam Protein kinase domain 413 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0849 705 Gene3D Ribonuclease Inhibitor 95 252 IPR032675 -
Vvi6g0849 705 CDD STKc_IRAK 416 681 - -
Vvi6g0849 705 MobiDBLite consensus disorder prediction 680 696 - -
Vvi6g0849 705 Pfam Leucine rich repeat 151 198 IPR001611 GO:0005515
Vvi6g0849 705 SUPERFAMILY L domain-like 109 293 - -
Vvi6g0849 705 Gene3D Transferase(Phosphotransferase) domain 1 486 704 - -
Vvi6g0849 705 MobiDBLite consensus disorder prediction 680 705 - -
Vvi6g0849 705 ProSitePatterns Protein kinases ATP-binding region signature. 416 447 IPR017441 GO:0005524
Vvi6g0849 705 FunFam Leucine-rich repeat receptor-like protein kinase 208 296 - -
Vvi6g0849 705 Gene3D Phosphorylase Kinase; domain 1 379 485 - -
Vvi6g0849 705 ProSiteProfiles Protein kinase domain profile. 410 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0849 705 Gene3D Ribonuclease Inhibitor 253 297 IPR032675 -
Vvi6g0849 705 SUPERFAMILY Protein kinase-like (PK-like) 414 688 IPR011009 -
Vvi6g0849 705 FunFam Leucine-rich repeat receptor-like protein kinase 97 207 - -
Vvi6g0849 705 Pfam Leucine rich repeat N-terminal domain 96 132 IPR013210 -
Vvi6g0849 705 FunFam pollen receptor-like kinase 1 378 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0849 Vvi-Chr6 8980928 8984806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0849 50 703 Receptor kinase-like Gene Family AT5G58300 66.261 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi6g0849 Pkinase 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0849 - - vvi:100241663 1201.42