Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0847 ATGTTAGGCTGCGTCAGGAAGAGTATGGGCAGTGACTTTGTGATGCCGATACGACCGGCGGTGAAGTTCTCCGAGCATGTGGTCACCACAAGTAAGCATATGCAGGAGCTGGAGTCTGTGAGCGCCTCTGAGTGTCTTTCGGGGAGGAGGAGAGTGCGGCACAGAGTTGTGAGGATTATTCATACCGACGGCGACGCTACAGACTCATCCAGTGACGATGAAGTGGAATTGGTGCAGAGAGTGAAGCGACACGTCACAGAGATCAGCCTCCAACCTTCAGTGGAGTCGCCACAAAAGGAGCCGACCAAGAAGAGAGTGTTGAGACTGCCGGAGTCGGAAAGCACTCGCCGGAAAAAATTCAGAGGCGTGCGTCAGAGGCCCTGGGGAAGGTGGGCGGCGGAGATCCGGGACCCGACCCGCCGGAAAAGGTTGTGGTTGGGGACGTACGACACGCCGGAGGAAGCGGCCAGGGTATACGACAAGGCCGCCGTCAGTTTAAAAGGCCCCAACGCCGTTACCAACTTTCCCTCCGTCGTCAAAACGGAATCCGTTGCTACTGCTGGTCAAAGTCAATCAGAGACCTGCAGTTTACCCAGCGTCACCGCCTCCTCGCCCACCTCAGTCCTCCGTTACAACGAGGAAGCGCCTTTCAACGGATTCGGGTACTGCGACGTCGACGCCTTCGGGTTTGATTTCGACGTGCCGTTAACTTTGCCGGACATATTTTCAAATAAGCACTTAGAGGAGGACGAATTCGGGGAGTTTGACCCCGACGATTTCTTAGTGTTTGAGACCTCTCTACCCCTCCTCCATTCCAACAAGAGTGATGAAGGCGAGTGCAGGGTGGGAGGGTTATAA 858 0.5548 MLGCVRKSMGSDFVMPIRPAVKFSEHVVTTSKHMQELESVSASECLSGRRRVRHRVVRIIHTDGDATDSSSDDEVELVQRVKRHVTEISLQPSVESPQKEPTKKRVLRLPESESTRRKKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTYDTPEEAARVYDKAAVSLKGPNAVTNFPSVVKTESVATAGQSQSETCSLPSVTASSPTSVLRYNEEAPFNGFGYCDVDAFGFDFDVPLTLPDIFSNKHLEEDEFGEFDPDDFLVFETSLPLLHSNKSDEGECRVGGL* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0847 285 MobiDBLite consensus disorder prediction 92 121 - -
Vvi6g0847 285 SUPERFAMILY DNA-binding domain 119 176 IPR016177 GO:0003677
Vvi6g0847 285 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 53 213 - -
Vvi6g0847 285 Pfam AP2 domain 119 168 IPR001471 GO:0003700|GO:0006355
Vvi6g0847 285 CDD AP2 118 176 IPR001471 GO:0003700|GO:0006355
Vvi6g0847 285 PIRSF PTI6 17 265 IPR017392 GO:0003700
Vvi6g0847 285 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700|GO:0006355
Vvi6g0847 285 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
Vvi6g0847 285 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Vvi6g0847 285 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Vvi6g0847 285 FunFam Ethylene-responsive transcription factor 2 118 177 - -
Vvi6g0847 285 Gene3D AP2/ERF domain 118 178 IPR036955 GO:0003700|GO:0006355
Vvi6g0847 285 MobiDBLite consensus disorder prediction 98 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0847 Vvi-Chr6 8969151 8970008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0847 9 211 AP2-EREBP Transcription Factor Family AT4G27950 42.857 7.95e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi6g0847 AP2 4.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0847 K13434 - vvi:100246641 556.599