Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0844 ATGTCTTATGTGCCACCGCACCTGAGGAACCCTTCTTCTTCTATCTCTCGAACCTCCAAACCTACCGAAACCTCCGCGGTAACCCTAGACGACACTCATCGCACCACCAACAACCTTTCCTATTCCTCCACAAACTCTCATCTCTCTCATTCCAACGCCTCTTCCTCTCCTTCTCTCTCTCGTTGGGCCTCCTCCAATGCCGCCGCCGTGCCTCGGACTCCCTCCGTTCCGGAGCCCGTTTTCCCTCAGTGGAAGCCTTCCGACCGTGTTTTCCTTATGAAACCTGAACAGATTGAAGAGGTCCGATTGCGGCTTAATGTTGATGTTACTGTTGCTCCAGACTTGCCTCCTGCACCTGCACCAATTGAATCATTCACAGACATGGGTCTGCACCAAAGCATCATGAAGGATATTACCTTTCATGAATATACTAGGCCCACCTTTATTCAAGCTCAGGCCATGCCAGTTGCTCTCAGCGGAAGGGATCTCCTGGGATGTGCTGAAACTGGTAGTGGAAAGACTGCTGCTTTTGCTATTCCTATGATTCAGCATTGCTTGGCTCAACCTCCTGTTCGGCGAGGTGATGGACCATTGGCATTGGTCTTGGCTCCCACAAGAGAGCTTGCCCAACAAATAGAAAAGGAGGTTAAGGCTTTTAGTAGATCACTTGATTCCTTTAGAACTGCGATAGTTGTGGGTGGAACAAACATTTCCGAGCAGAGGTCTGAACTTAGAGCAGGAGTAAATATAGTGGTTGCCACTCCTGGAAGATTCATTCATCATTTACAAGAAGGAAACACGTCTCTTTCCAGAATTTCATTTGTTGTTTTGGATGAAGCTGACAGAATGCTTGACATGGGATTTGAACCACAAATAAGAGAGGTGATGCAAAATCTGCCACAAAAGCATCAAACACTGCTGTTCAGTGCAACCATGCCAATGGAGATTGAAACATTAGCACAGGAGTATCTAAATAATCCTGTGCAAGTAAAGGTGGGAAAAGTGAGTTGCCCAACAGCAAATGTTTCTCAGATTTTGGAGAAGGTTTCTGAAAGTGAGAAGATTGATGGACTTCTAGCTTTACTTGTGGAGGAGGCATCCCAGGCTGAAAGATGTGGTCGTCCCTTTCCTTTAACCATCGTTTTTGTTGAGAGGAAGACAAGGTGCGATGAAGTCGCGGAAGCTTTGGTAGCTCAAGGTCTGCGTGCAGTTGCTCTTCATGGTGGCCGCAGTCAAGCTGAAAGAGAGGCTGCCCTTCGTGATTTTAGGAATGGTGCTACTAATATCTTGGTTGCCACTGATGTTGCGTCCCGTGGTCTGGATGTTACAGGAGTCGCCCATGTTATTAATCTCGATCTTCCAAAGGCAATGGAAAATTATGTACACCGGATTGGAAGGACGGGGCGTGCAGGATCAACAGGCCAAGCTACTTCTTTTTATACTGATCGTGATGTGTTCCTTGTGGCTCATATAAGGAAAGCAATTGCTGATGTTGGATCTGGGAATACTGTGGCATTTGCAACTGGGAAAGTTGCAAGAAAGAAGGAGAGAGAAGCAGCAGCTGCACAGAAAGAAGCTAGGATTGCATTGTCCAATCTCTCATTGATGGGGCCGACATCATTAAATATAGAGGAAAAGTATAGGTTCATGATGAGCCCCTCGAGCATCAAGACAGAAGGTGCAGCAGATGATGCTTGGGATGACTGA 1707 0.4687 MSYVPPHLRNPSSSISRTSKPTETSAVTLDDTHRTTNNLSYSSTNSHLSHSNASSSPSLSRWASSNAAAVPRTPSVPEPVFPQWKPSDRVFLMKPEQIEEVRLRLNVDVTVAPDLPPAPAPIESFTDMGLHQSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMIQHCLAQPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSELRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLPQKHQTLLFSATMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLALLVEEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALRDFRNGATNILVATDVASRGLDVTGVAHVINLDLPKAMENYVHRIGRTGRAGSTGQATSFYTDRDVFLVAHIRKAIADVGSGNTVAFATGKVARKKEREAAAAQKEARIALSNLSLMGPTSLNIEEKYRFMMSPSSIKTEGAADDAWDD* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0844 568 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 330 IPR014001 -
Vvi6g0844 568 CDD DEADc 134 331 - -
Vvi6g0844 568 SMART helicmild6 390 471 IPR001650 -
Vvi6g0844 568 CDD SF2_C_DEAD 342 480 - -
Vvi6g0844 568 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 276 284 IPR000629 -
Vvi6g0844 568 Gene3D - 337 528 IPR027417 -
Vvi6g0844 568 SMART ultradead3 142 345 IPR014001 -
Vvi6g0844 568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 492 IPR027417 -
Vvi6g0844 568 Pfam Helicase conserved C-terminal domain 378 471 IPR001650 -
Vvi6g0844 568 Gene3D - 85 334 IPR027417 -
Vvi6g0844 568 Coils Coil 512 532 - -
Vvi6g0844 568 MobiDBLite consensus disorder prediction 1 60 - -
Vvi6g0844 568 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Vvi6g0844 568 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 512 IPR001650 -
Vvi6g0844 568 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 120 503 - -
Vvi6g0844 568 Pfam DEAD/DEAH box helicase 149 318 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0844 Vvi-Chr6 8895193 8916273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0844 123 484 Eukaryotic Initiation Factors Gene Family AT3G13920 36.164 3.60e-67 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0844 K12823 - vvi:100258635 1048.88