Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0838 ATGGGTTCGAGGATTTGCAAGAACAAATGGTGTGGTACGACAGCGTCGTTTGAATGGAAGAAGGGATGGACTATAAAATCCGGTGCAGTTGTCGACCTTTGCTACAAATGCGGTTCCGCTTATGAGAATTTAGTTTTCTGTGAAACCTTCCACCAAGAGGAAGACGGTTGGAGGCAATGCAGTTTATGCCACAAGCGTATTCATTGTGGATGCATTGTTTCAAACTATCAATTTGAGGCCCTTGATTATGGTGGTGTAAGGTGTTCTAGCTGTTTAAAGAGCCCTCAATGTCATCCGAATGATGAAACTCCCAATGAATTTGGTACATCAACTGCAAATAGCATCAACAATTTGCAACACCCTTGTGTTGAAAATAGAATGAATTGCAATATTGTTGGCAAGGATAATTTTATGCAATTGGGAAAAACTATGGAGGCCGATGAGCTCAACCACTTGCTTCAATCTCAGAAAGGTGATGCAAATGTATCTCTTGGACAAATCAAACAAGATGATAGCATGCATGCAGTTAGAGAAGTTAACACTATCTTTCCAACCACATCTCTACCATCCATTGGACCATCTGAATTTGCCAAATCAGACAATAGTATACCGATGTTAATGGGTAAAGATGTGTATGAATCATTGGTTCAACCATCATTGAATATCAGCTTGAGTTCCTCTTCAGGGCCTCCAAATTTTTTGTTACCTTTTCCTGGTAATGCTGTTGAAGGAATGGAACACAGCAAATCAGCTTTCACTTTTCAACAAGGGCAAAGGACACGGCATATACTGCCCAAACCTCCAAATTCTAGCCTCTCGATAGGTTCAGAGGCAAATAAAAGCATGGTTCCTGAGATTCGCATTGCAAGGCCACCTGCTGAGGGGAGGGGACGGAATCAGTTACTTCCTCGATACTGGCCAAGGATTACCGACCAGGAACTGCAGCAATTATCTGGAGATTTGAATTCCACCATTGTGCCATTATTCGAGAAGGTTCTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTCCTCCCAAAAGCATGTGCTGAAGCATATTTTCCTCCTATTTCTCAATCAGAAGGCCTTCCATTGAGGGTTCAGGATGCAAAGGGGACAGAGTGGACATTTCAATTCAGATTTTGGCCCAATAATAACAGCCGGATGTATGTTTTAGAAGGGGTAACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGTTATATTTAGTCGGATAGATCCTGGAAACAAACTTGTCATTGGATGTCGAAAGGCATCAAATTGTGTTGATGTGCAGGATGCCCAAACATCAGCCCTGTCTAATGGCACTATTTATGGAGGATCTTCTTTTTCTAGTGTCACTGAAAACCTGTCTACATGTGCAGGCAAGATGAATGAGGATTCTCCACAGCAATCGCTGCTGATTCCAGAGAAGAAGAGGACTCGAAATATTGGGTCCAAAAATAAGAGGTTGCTCATGCATAGTGAAGATGCCCTGGAGTTGAAAATAACATGGCAGGAAACACAGGACATACTTCGCCCACCTCCAAGTGTTGAGCCAAACATTGTCACTATTGAAGGCTATGAAATTGAGGAATATACTGAACCTCCGGTTTTTGGAAAAAGGAGTATATTCACAGCCCGACCATCTGGGGGGCAGGATCAATGGGGTCAGTGTGATAATTGCTCCAAATGGCGAAAGTTGCCCATAGATGTTTTTCTCCCTCTCAAGTGGACATGTGCAGACAACATTTGGGATTTGAGCAGGTGTTCATGTTCTGCACCAGATGAGTGGAATCCAAAGGAATCAGAAAGTCTTTCCAGACTTGGAAAGGATTACAAGAGGCAAAAATCCATGGAGAGCCATAAATTAGCCCAAGAAGGTGAGCCTACTGGCTTAGATGCTCTGGCCAATGCTGCAGTTCTAGAAGAAAATGGAGGTGACTCTGGTGAGCCATCAGCTGAAGCCACCACCAGACACCCTCGGCACCGCCCTGGCTGCTCGTGTATTGTATGTATTCAGCCCCCAAGTGGAAAGGGCAAGCACAAGTCCACATGCATATGCAATGTGTGCATGACTGTGAAGCGCCGATTCAGAACCCTAATGCTGCGCAAAAAGAAACGCCAATCAGAGCATGAAGCAGAATCTTCACAGATTAAGCACCAGATTCACCCCATCAATGAATCAGAAATAAGCGGCATGGTAAGAAATGTGTCATTGCAGAGAAACCATTCAGACGGTGAAAACAACCAGAGCAAAATCCAAGAAGAGGTAGTCGCTGAAACTGGTACAGGACAAATAGACTTGAACTGCCGTCCTGACAATGAAGAAGACCTGCTTCCAGGTGTAACAGGAGTGAGCATGACAAGCCTTGTTCAAGCAGCAAGCCATCCATTGGATTTCTACTTGAAGCAGACTGGGCTCACAAGTTTGATATCTGACCAACCGATGAGCTCAAACTCCCGTCCCCTCCCCCAGGTTACTGGAGGGGAAGATGGACACCTAACTGATGAACGGTCCCTTTCACCTCTAATCTGGGAGCATGGGAGTGGAGCTGGTGAAGGCTACCACAAACCTGATTTGGACTGA 2601 0.4468 MGSRICKNKWCGTTASFEWKKGWTIKSGAVVDLCYKCGSAYENLVFCETFHQEEDGWRQCSLCHKRIHCGCIVSNYQFEALDYGGVRCSSCLKSPQCHPNDETPNEFGTSTANSINNLQHPCVENRMNCNIVGKDNFMQLGKTMEADELNHLLQSQKGDANVSLGQIKQDDSMHAVREVNTIFPTTSLPSIGPSEFAKSDNSIPMLMGKDVYESLVQPSLNISLSSSSGPPNFLLPFPGNAVEGMEHSKSAFTFQQGQRTRHILPKPPNSSLSIGSEANKSMVPEIRIARPPAEGRGRNQLLPRYWPRITDQELQQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLRVQDAKGTEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVIFSRIDPGNKLVIGCRKASNCVDVQDAQTSALSNGTIYGGSSFSSVTENLSTCAGKMNEDSPQQSLLIPEKKRTRNIGSKNKRLLMHSEDALELKITWQETQDILRPPPSVEPNIVTIEGYEIEEYTEPPVFGKRSIFTARPSGGQDQWGQCDNCSKWRKLPIDVFLPLKWTCADNIWDLSRCSCSAPDEWNPKESESLSRLGKDYKRQKSMESHKLAQEGEPTGLDALANAAVLEENGGDSGEPSAEATTRHPRHRPGCSCIVCIQPPSGKGKHKSTCICNVCMTVKRRFRTLMLRKKKRQSEHEAESSQIKHQIHPINESEISGMVRNVSLQRNHSDGENNQSKIQEEVVAETGTGQIDLNCRPDNEEDLLPGVTGVSMTSLVQAASHPLDFYLKQTGLTSLISDQPMSSNSRPLPQVTGGEDGHLTDERSLSPLIWEHGSGAGEGYHKPDLD* 867
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0838 866 FunFam B3 domain-containing transcription repressor VAL1 307 434 - -
Vvi6g0838 866 SUPERFAMILY DNA-binding pseudobarrel domain 326 425 IPR015300 -
Vvi6g0838 866 Gene3D - 307 434 IPR015300 -
Vvi6g0838 866 MobiDBLite consensus disorder prediction 648 667 - -
Vvi6g0838 866 ProSiteProfiles B3 DNA-binding domain profile. 329 430 IPR003340 GO:0003677
Vvi6g0838 866 CDD B3_DNA 327 428 IPR003340 GO:0003677
Vvi6g0838 866 Pfam B3 DNA binding domain 329 428 IPR003340 GO:0003677
Vvi6g0838 866 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 820 - -
Vvi6g0838 866 Pfam CW-type Zinc Finger 560 601 IPR011124 GO:0008270
Vvi6g0838 866 ProSiteProfiles Zinc finger CW-type profile. 554 604 IPR011124 GO:0008270
Vvi6g0838 866 Gene3D - 551 603 - -
Vvi6g0838 866 MobiDBLite consensus disorder prediction 817 866 - -
Vvi6g0838 866 SMART B3_2 329 429 IPR003340 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi6g0838 Vvi-Chr6 8848760 8856971 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0838 1 783 B3 DNA Binding Superfamily AT2G30470 48.519 0.0 718
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi6g0838 B3 2.5e-15 CL0405