Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0836 ATGGCTTGGAACTTGTATGCTGGGCCTCGTCGCCTGCTCCTGGATACAGAAACTGCTATGCCACCAATGAATGGAAGCAGGGGAAGTAGCTCATATGCCAATGATGCGAACTTTGACAGCAACATGGTGATAATCCTAGCAGCCCTGCTATGCGCATTGATCTGTGCGCTTGGATTGAACTCAATTGTGCGCTGTGCTTTGCGTTGTAGTAATCGATTTTCCCTTGAGACCCCAGATCAGGTTGCTGCGCATTTAGCCACAACAGGCCTTGAGAAGGGCACCCTGAGCCAGATTCCAGTTGTGGTGTATGGCTCATCAGGTCTAACTACTCCAGCCACAGACTGCCCCATATGTCTGGGGGAATTCACTGAAGGAGACAAGGTAAGGATCTTACCAAAATGCAATCATGGTTTCCATGTTAAGTGTATTGACACATGGTTGATGTCCCGCTCTTCCTGCCCAACATGTCGCCAACCATTGCTTGAACATCCAACAAATTCTAATGGGGAGGAGCTGGTTGTCAGAATCCTCCAAATCCATCCAAGCTCTGTTCAGACTCATCAGATCAATCAGCCCTGGGTGAGCATTTTGTGGGGTCTTGCCAATTTCCTTCAAACTTCTCTATCAGAACTCAGGCTGAGCTTACTTTGTTGTTCTTGGCGTCTTCATGTATTCACAGTTTTCCAAGTTGAGCTAGAGATTATGAAGAAAAAGGAACAAACTGCAAAGAGAAGTCTGAGGAATGGGGTTGTTCAGATCATAATAGATTATTTGAGAACTGAAGTTGCTTAG 792 0.4621 MAWNLYAGPRRLLLDTETAMPPMNGSRGSSSYANDANFDSNMVIILAALLCALICALGLNSIVRCALRCSNRFSLETPDQVAAHLATTGLEKGTLSQIPVVVYGSSGLTTPATDCPICLGEFTEGDKVRILPKCNHGFHVKCIDTWLMSRSSCPTCRQPLLEHPTNSNGEELVVRILQIHPSSVQTHQINQPWVSILWGLANFLQTSLSELRLSLLCCSWRLHVFTVFQVELEIMKKKEQTAKRSLRNGVVQIIIDYLRTEVA* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0836 263 CDD RING-H2_EL5-like 114 157 - -
Vvi6g0836 263 PANTHER RING-H2 FINGER PROTEIN ATL78 10 170 IPR044602 GO:0016567|GO:0016740
Vvi6g0836 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 166 IPR013083 -
Vvi6g0836 263 SMART FANCL_C_2 111 164 - -
Vvi6g0836 263 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Vvi6g0836 263 Pfam Ring finger domain 114 157 IPR001841 -
Vvi6g0836 263 SUPERFAMILY RING/U-box 108 165 - -
Vvi6g0836 263 SMART ring_2 115 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0836 Vvi-Chr6 8844138 8845413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0836 11 177 C3H Transcription Factor Family AT3G10910 55.495 8.17e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0836 K19040 - vvi:100248379 355.525