Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0835 ATGAAAATGCAAGATCCATCTAGCTCCCACAATGCTCCCAAAAATTCAACGCCGGCGACGATGTACGGAAACCCTGCTACCTCCTTCAGAGGTCCTCACCACCGGCGAGCTCATTCCGAGCTCACTTTCCGGATGCCGGACGACGTGGATCTATCCTCCTCCGATCCCTTCAACGCCTCTGCCGCCAGCCTCGAAGAGATCGCCTCCGAGGACGACCTCTTCTCCACGTACATCGATGTCGACAAGCTCGGCGCCGGGGGGAATGGTGCGGATCAGAGCGGTGAGGCGGAGAAGAGTGTGAAGCCTCGGCATCGGCACAGTAATTCGGTGGATTGCTCGTCCTCCAAGGGAGAAGAGGGTGTTTTTGGTGAGATTATGGACGCTAAGAAGGCAATGCCTCCTGATAAGTTGGCTGAGCTTTGGAATATTGATCCTAAGCGCGCCAAAAGGATTCTGGCAAACCGGCAATCTGCTGCTCGCTCAAAAGAGAGGAAGGCCCGTTATATATTAGAACTTGAGCGAAAAGTTCAGACCCTTCAAACAGAAGCCACCACTCTTTCTGCACAACTCACACTGTACCAGAGAGACACAACAGGTCTAAGTACTGAAAACACAGAACTTAAGCTTCGGTTACAAGCTATGGAGCAACAAGCTCAATTGCGTGATGCTCTAAATACAGCATTGAAGCAGGAAGTTGAGAGACTAAAAATTGCCACTGGGGAAATAATGAGCCCCTCTGAGTCATTTGACCTGGGAATGCAGCAAATGCTATACACCCCATCATCCTTTCTCTCACTTCCTCAACAAATTGGGCCTGCTGGCCAGCCAAACATGCAGTTGCCACCATTCCATCATTCCCATTCTAACATGTCAACTCAGTACCTGCAGCCTATAAATTCTCAACCGATCTCAGAAATTTTGCAGAATGACCCTCTTGGCCGATTACAGGGCCTTGACATCAGTAGCAGAGGCTCACATCTTGTGAAGTCTGAAGGCCCTTCCATCTCTGCCTGCGAGAGTAGCAGCACGTTTTAA 1035 0.5034 MKMQDPSSSHNAPKNSTPATMYGNPATSFRGPHHRRAHSELTFRMPDDVDLSSSDPFNASAASLEEIASEDDLFSTYIDVDKLGAGGNGADQSGEAEKSVKPRHRHSNSVDCSSSKGEEGVFGEIMDAKKAMPPDKLAELWNIDPKRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAQLRDALNTALKQEVERLKIATGEIMSPSESFDLGMQQMLYTPSSFLSLPQQIGPAGQPNMQLPPFHHSHSNMSTQYLQPINSQPISEILQNDPLGRLQGLDISSRGSHLVKSEGPSISACESSSTF* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0835 344 MobiDBLite consensus disorder prediction 84 117 - -
Vvi6g0835 344 Coils Coil 162 189 - -
Vvi6g0835 344 MobiDBLite consensus disorder prediction 1 34 - -
Vvi6g0835 344 Pfam bZIP transcription factor 146 201 IPR004827 GO:0003700|GO:0006355
Vvi6g0835 344 Gene3D - 145 198 - -
Vvi6g0835 344 MobiDBLite consensus disorder prediction 1 24 - -
Vvi6g0835 344 MobiDBLite consensus disorder prediction 325 344 - -
Vvi6g0835 344 FunFam probable transcription factor PosF21 145 198 - -
Vvi6g0835 344 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 144 207 IPR004827 GO:0003700|GO:0006355
Vvi6g0835 344 MobiDBLite consensus disorder prediction 96 112 - -
Vvi6g0835 344 CDD bZIP_plant_RF2 147 196 IPR044759 GO:0003700|GO:0006355
Vvi6g0835 344 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 5 293 - -
Vvi6g0835 344 SMART brlzneu 142 206 IPR004827 GO:0003700|GO:0006355
Vvi6g0835 344 MobiDBLite consensus disorder prediction 271 290 - -
Vvi6g0835 344 SUPERFAMILY Leucine zipper domain 146 197 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0835 Vvi-Chr6 8836009 8840983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0835 3 344 bZIP Transcription Factor Family AT2G40620 50.255 5.63e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi6g0835 bZIP_1 6.7e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0835 - - vvi:100243248 675.626