Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0830 ATGAAACGGAATCGTACCAACCAAACATATCATCTCTATCTCGGCTTAATTCAAGCTTCAACTGATGATGGAAAGTTTCTTCTTGCTGCATGGAACTGTAGACGTCTTACTTGCACAGACGATATCATCTCTCTTAATGCTGGTGATGTTTGGAAGGGGAGCACCACTTATATAGGAAAGTTGAGGTATGTGTACATGTTATATGAGGTGGTTCATGGGATTTATTGCTTTAATTTTATTTTATTTTTTTTGTTTCTTATTGTGGTAATCCCCCTTTGTAGTTCCACTTTATTTGCTGAGAGACTTATTGCCTTTGCATGTGTTGAAGGAATCTTTTTCTCAGGAAGCTTCTGTGCCATTTTTTGGCTTAAAAAGAAAGGATTGATGCCAGGTTTGACTTTCTCAAATGAGCTTATTTCTAGATATGAGGGCCTTCACTGCGATTTTGCTTGTCTTCTGTACAGTTTATTACAGAAACAGCTACCCTGGCAAAAGGTTCATCACATTGTCCATGAAGCAATGGAAATTGAAACCCAGTTCATTTGTGAAGCCCTGCCTTGTGCATTGATTGGCATGAAAGCAACACTCATGAGCCATTACATAAAATTTGTCGTTGACCGCCTTTTGGTTGCCCTTGGGTATGAGAGGAAATACAACGTGGAAAATCCATTTGATTGGATGGAGTTTATTTTTTTACAGGGTAATGCAAACTTCTTTCAGAGAAGAATGGGTGATTATCAAAAGGCATCTATAATGTCAAGCCTAGATGGTGGAAAGAATTATGTCTTCAAGATAGATGAGGACTTTTAG 810 0.3815 MKRNRTNQTYHLYLGLIQASTDDGKFLLAAWNCRRLTCTDDIISLNAGDVWKGSTTYIGKLRYVYMLYEVVHGIYCFNFILFFLFLIVVIPLCSSTLFAERLIAFACVEGIFFSGSFCAIFWLKKKGLMPGLTFSNELISRYEGLHCDFACLLYSLLQKQLPWQKVHHIVHEAMEIETQFICEALPCALIGMKATLMSHYIKFVVDRLLVALGYERKYNVENPFDWMEFIFLQGNANFFQRRMGDYQKASIMSSLDGGKNYVFKIDEDF* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0830 269 SUPERFAMILY Ferritin-like 96 248 IPR009078 -
Vvi6g0830 269 Gene3D Ribonucleotide Reductase, subunit A 68 228 IPR012348 GO:0016491
Vvi6g0830 269 Gene3D Tubby Protein; Chain A 1 67 IPR025659 -
Vvi6g0830 269 Pfam Tub family 1 63 IPR000007 -
Vvi6g0830 269 CDD RNRR2 98 232 IPR033909 GO:0009263
Vvi6g0830 269 SUPERFAMILY Tubby C-terminal domain-like 2 63 IPR025659 -
Vvi6g0830 269 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 97 269 IPR000358 GO:0009263
Vvi6g0830 269 Pfam Ribonucleotide reductase, small chain 97 223 IPR000358 GO:0009263
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0830 Vvi-Chr6 8785410 8790997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0830 3 66 TUB Transcription Factor Family AT2G47900 69.697 1.78e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vvi6g0830 Ribonuc_red_sm 1.3e-45 CL0044
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0830 K10808 - vvi:100267871 371.318