Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0827 ATGGCCAACCGACCATCTCCATTTGGCCTCTTCTTCTTCTTCGCTTTCTTCACTCTACAAATGCTCGCAGCCTCCGCCGACTACAGTGGCTGGGAGGGCGGCCACGCCACCTTCTACGGCGGCGGTGACGCCTCCGGCACAATGGGAGGAGCGTGTGGGTATGGGAACTTGTACAGCCAGGGGTACGGAACCAACACAGCGGCGCTGAGCACCGCGCTGTTCAACAATGGGCTGAGCTGCGGAGCTTGTTTCGAAATGCGATGCGACAACGACCCCAGGTGGTGCCTCCCTGGCTCCATCACCGTCACTGCAACCAACTTTTGCCCCCCCAACTTCGCTTTGGCCAACAACAATGGCGGGTGGTGCAACCCTCCTCTCCAACACTTCGACCTCGCGGAGCCTGCCTTCCTCCAAATTGCACAGTACCGCGCTGGCATCGTCCCTGTTGCCTTCAGAAGGGTACCATGTGCGAAGAAAGGAGGAATCAGATTCACCATCAATGGCCACAAATACTTCATCCTAGTCCTGGTAACCAACGTCGCCGGCGCCGGCGACATCCACTCCGTCTCCATCAAGGGTTCCCGAACAGGGTGGCAAACCATGTCAAGAAACTGGGGCCAAAACTGGCAGAGCAACTCCGTTCTCAACGGCCAGAGCCTGTCCTTCATGGTCACCGCCGGCGACGGCAGAACCGTCACAAGCTTCAACGTCGCCCCGTCCGGCTGGCAGTTTGGCCGGACCTACGAGGGTAGCCAATTTTAG 762 0.5879 MANRPSPFGLFFFFAFFTLQMLAASADYSGWEGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEMRCDNDPRWCLPGSITVTATNFCPPNFALANNNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVAFRRVPCAKKGGIRFTINGHKYFILVLVTNVAGAGDIHSVSIKGSRTGWQTMSRNWGQNWQSNSVLNGQSLSFMVTAGDGRTVTSFNVAPSGWQFGRTYEGSQF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0827 253 Pfam Lytic transglycolase 66 150 IPR009009 -
Vvi6g0827 253 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Vvi6g0827 253 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Vvi6g0827 253 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Vvi6g0827 253 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Vvi6g0827 253 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Vvi6g0827 253 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Vvi6g0827 253 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Vvi6g0827 253 CDD DPBB_EXPA_N 30 156 - -
Vvi6g0827 253 PANTHER EXPANSIN-A15 11 253 IPR002963 GO:0009664
Vvi6g0827 253 SMART dpbb_1 66 151 IPR007112 -
Vvi6g0827 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Vvi6g0827 253 Gene3D - 160 253 IPR036749 -
Vvi6g0827 253 FunFam Expansin 21 157 - -
Vvi6g0827 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Vvi6g0827 253 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Vvi6g0827 253 Gene3D - 18 157 IPR036908 -
Vvi6g0827 253 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Vvi6g0827 253 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Vvi6g0827 253 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Vvi6g0827 253 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Vvi6g0827 253 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Vvi6g0827 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Vvi6g0827 253 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Vvi6g0827 253 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Vvi6g0827 253 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Vvi6g0827 253 SUPERFAMILY Barwin-like endoglucanases 30 179 IPR036908 -
Vvi6g0827 253 FunFam Expansin 161 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0827 Vvi-Chr6 8696274 8697795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0827 5 253 Expansin Gene Family AT2G40610 74.800 5.04e-140 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0827 - K20628 vvi:100263822 517.309