Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0824 ATGACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATACTTATACTCTCCCCAAGTTGTATGCCAAGATGCAGTACTGTGTTTCTTGTGCAATTCATTCGCATGTTGTTAGGGTTCGTTCCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCTGCTCGTCCCTGA 375 0.5147 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDTYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPLRFRRRDDMPKPGQAPRPAGAAAARP* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0824 124 ProSitePatterns Ribosomal protein S26e signature. 73 80 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vvi6g0824 124 Gene3D Ribosomal protein S26e 1 115 IPR038551 -
Vvi6g0824 124 PANTHER 40S RIBOSOMAL PROTEIN S26 1 120 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vvi6g0824 124 FunFam 40S ribosomal protein S26 1 113 - -
Vvi6g0824 124 MobiDBLite consensus disorder prediction 86 124 - -
Vvi6g0824 124 Pfam Ribosomal protein S26e 1 106 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vvi6g0824 124 MobiDBLite consensus disorder prediction 90 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0824 Vvi-Chr6 8682745 8684665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0824 1 112 Cytoplasmic Ribosomal Protein Gene Family AT2G40590 84.956 2.48e-66 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0824 K02976 - vvi:100260347 204.142