Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0817 ATGCCAGAGATCGAACGCGGCTCAGGGAGTGGGGCCGCTTCGGCTACCTCGTCGGAGAAGGCTTTGTTTGGGAAGTATGAGCTCGGCAGATTGCTGGGCTGTGGGGCGTTTGCGAAGGTGTATCATGCGAGGAATATCAGGACAGGGCAAAGTGTGGCCATTAAAGCAATATGTAAGAAGAAGATCGTTGGGAGCAACTTGATGGCGAATGTGAAACGGGAGATCTCTATCATGCGCCGGTTGCAGCACCCTCACATCGTGAAGCTGTATGAGGTGTTGGCGACCAAGACCAAGATCTATTGCGTGATGGAGTTCGTGAAAGGTGGGGAGCTGTTCGCGAAGGTCGCCAAGGGGCGGTTCAGCGAGGATCTGAGCCGTCGGTATTTCCAGCAGTTGATCTCCGCCGTCGGGTACTGCCATTCGCGGGGGGTGTTTCACCGGGATCTGAAACCGGAGAACCTCCTCGTTGACGAGAACGGGTGCTTGAAGGTTTCAGATTTCGGGCTCAGCGCCTTGACGGATCAGATTCGCCTCGACGGCCTCCTGCACACCTTGTGCGGCACTCCAGCTTACGTCGCGCCGGAGATTCTCACCAAGAAAGGCTACGATGGGGCGAAAGTGGATGTGTGGTCCTGCGGAGTCATCCTCTTCGTGTTGAACGCCGGTTACCTACCCTTCAACGATCCCAATCTCATGGCCATGTACAAGAAAATATACAAAGGCGAGTTCCGGTGCCCTAAATGGATGTCGCCGGACCTTAAACGTTTCCTTTCTCGCCTCCTCGACACCAACCCCAACACCAGGATCACCGTCGATGAAATCCTGCAGGACCCATGGTTCAGAAAAGGATACAAAGAGGTGAAGTTCCATGAAGAAGATTTCGGACTCAAATCCGAAAAAGAGGACCGAAGCCCCACGAACTTGAATGCCTTCGACATAATTTCGTTCTCGTCTGGTTTGAACTTGTCGGGTCTGTTCAATGACTCGTCCAAGTCGTCGCCGGATGACGACGAGCGATTTGTATCGGCCGAGCCCGTGGAGAAAATAATCGAGAAAATCGAGGAAATTGCCGAAGGTGAGAACCTGACGGTGAATTGGAAGAAGGAATGGGGAGTTGACCTGCAGGGACCAAATGGTAATTTCATAATCGGGGTTCAAATTGATCGATTAACCCATGATTTGGTCGTCGTGGAGGTTAGGAGGAGAGCCGGCGATGCAGCGGCCTACGCCGCCGCGTGGAAGGATAAGCTCCGGCCGGCGCTCGCCGGACTCATGTTCCAAGGACCGGAGACCCAAGTCGCCGGCGATTAA 1311 0.5408 MPEIERGSGSGAASATSSEKALFGKYELGRLLGCGAFAKVYHARNIRTGQSVAIKAICKKKIVGSNLMANVKREISIMRRLQHPHIVKLYEVLATKTKIYCVMEFVKGGELFAKVAKGRFSEDLSRRYFQQLISAVGYCHSRGVFHRDLKPENLLVDENGCLKVSDFGLSALTDQIRLDGLLHTLCGTPAYVAPEILTKKGYDGAKVDVWSCGVILFVLNAGYLPFNDPNLMAMYKKIYKGEFRCPKWMSPDLKRFLSRLLDTNPNTRITVDEILQDPWFRKGYKEVKFHEEDFGLKSEKEDRSPTNLNAFDIISFSSGLNLSGLFNDSSKSSPDDDERFVSAEPVEKIIEKIEEIAEGENLTVNWKKEWGVDLQGPNGNFIIGVQIDRLTHDLVVVEVRRRAGDAAAYAAAWKDKLRPALAGLMFQGPETQVAGD* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0817 436 Gene3D Phosphorylase Kinase; domain 1 15 105 - -
Vvi6g0817 436 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0817 436 FunFam Non-specific serine/threonine protein kinase 16 308 - -
Vvi6g0817 436 Pfam NAF domain 305 365 IPR004041 GO:0007165
Vvi6g0817 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vvi6g0817 436 Gene3D Transferase(Phosphotransferase) domain 1 106 287 - -
Vvi6g0817 436 Gene3D Kinase associated domain 1, KA1 304 427 - -
Vvi6g0817 436 SMART serkin_6 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0817 436 FunFam Non-specific serine/threonine protein kinase 17 105 - -
Vvi6g0817 436 CDD CIPK_C 309 421 - -
Vvi6g0817 436 SUPERFAMILY Protein kinase-like (PK-like) 23 290 IPR011009 -
Vvi6g0817 436 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0817 436 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 18 402 - -
Vvi6g0817 436 ProSitePatterns Protein kinases ATP-binding region signature. 32 59 IPR017441 GO:0005524
Vvi6g0817 436 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0817 Vvi-Chr6 8640708 8642018 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0817 1 434 CBL-interacting serine-threonine protein kinases AT2G30360 65.909 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi6g0817 Pkinase 1.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0817 - K12761 vvi:100250106 828.165