Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0813 ATGGAGAGTAAAGGGGCTGTGTTGATGAACAGATATGAATTAGGAAGATTGCTAGGGCAAGGTACCTTTGCTAAGGTTTACTATGCCAGGAATCTTAAAACTGGCCAGAGTGTGGCCATTAAAGTGATAGACAAAGAGAAGGTTGTGAAGGTAGGGCTCAAAGATCAGATCAAGCGAGAAATATCTGTTATGAAACTGGCTAGACACCCTAATGTTTTGCAGCTTTATGAGGTTATGGCCACCAAAAGTAAGATCTACTTTGTTATGGAATATGCTAAAGGTGGTGAGCTCTTTAAGAAGGTGGCTAAAGGGAAGCTAAAGGAGGAAGTTGCGTGGAAATATTTTAGGCAGCTGATTGATGCTGTTGATTTCTGCCATAGCAGGGGAGTTTATCACCGTGATCTGAAACCGGAAAACTTATTGTTGGATGAGAATGATAACCTGAAGGTCTCTGATTTTGGATTAAGTGCCATGGCTGAATGCAAGCATCAAGATGGGCTACTCCACACCACTTGTGGGACTCCTACCTATGTTGCTCCTGAAGTGATCAACAAAAAAGGCTATGACGGGGCCAAAGCTGACATTTGGTCTTGTGGGGTGGTCTTATTTGTCCTACTGGCGGGTTATCTCCCATTTCATGATTCAAATTTGATTGAAATGTATAGGAAGATTAGTAAGGCAGAGTTTAAGTGCCCTAATTGGTTCTCACCAGATGTACGCAGGTTGCTTCAAAAGATATTGGATCCAAATCCCAATACTCGAATTTCCATTGCCAAAATCAAGGAAAGTTCTTGGTTCAGAAGAGGATTGAAATCCAAACAGATAAAATCTGAAACAGGAAGCAAGGACATGGCTCCTTTGGATACAGATGCAGCTTCGGGTCCCTGCAAAAGTAATGGTATGGCTTCTGAAGCAAAGCAAGAGTTAGCCAAACCTACAAACCTGAATGCTTTCGATATCATCTCTATTTCTGCTGGTTTTGATCTGTCTGGCTTGTTCGAGGAACCTTGTCAAAAGAAAAAGGCAATATTTACTTTCAGAAAACCTGCTGCTGTCATCATCTCTCGACTGGAAGAAATTGCCAAGCATCTGAGGCTGAAAGTGATGAAGAAGGATGCAGGTTTCATGAAATTTGAGGGCCTGAAGGAAGGTAAGAAAGGAATCTTGTCTATTGATGCAGAGATTTTTGAGGTGACACCATCTTTTCATTTGGTGGAAGTAAAGAAGTCTAATGGAGATACGTTGGAATATCAGAAGCTACTGAAAGAAGATATAAGACCTGCTCTCCAAGATATCGTTTGGACTTGGCAAGGTGAGGAGCAGCAGCAACAACAACAGCTTTCCTGA 1347 0.4187 MESKGAVLMNRYELGRLLGQGTFAKVYYARNLKTGQSVAIKVIDKEKVVKVGLKDQIKREISVMKLARHPNVLQLYEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEEVAWKYFRQLIDAVDFCHSRGVYHRDLKPENLLLDENDNLKVSDFGLSAMAECKHQDGLLHTTCGTPTYVAPEVINKKGYDGAKADIWSCGVVLFVLLAGYLPFHDSNLIEMYRKISKAEFKCPNWFSPDVRRLLQKILDPNPNTRISIAKIKESSWFRRGLKSKQIKSETGSKDMAPLDTDAASGPCKSNGMASEAKQELAKPTNLNAFDIISISAGFDLSGLFEEPCQKKKAIFTFRKPAAVIISRLEEIAKHLRLKVMKKDAGFMKFEGLKEGKKGILSIDAEIFEVTPSFHLVEVKKSNGDTLEYQKLLKEDIRPALQDIVWTWQGEEQQQQQQLS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0813 448 SUPERFAMILY Protein kinase-like (PK-like) 8 273 IPR011009 -
Vvi6g0813 448 CDD STKc_SnRK3 11 265 - -
Vvi6g0813 448 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 429 - -
Vvi6g0813 448 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Vvi6g0813 448 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vvi6g0813 448 Gene3D Kinase associated domain 1, KA1 310 435 - -
Vvi6g0813 448 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Vvi6g0813 448 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0813 448 CDD CIPK_C 316 430 - -
Vvi6g0813 448 Gene3D Phosphorylase Kinase; domain 1 3 91 - -
Vvi6g0813 448 FunFam Non-specific serine/threonine protein kinase 310 434 - -
Vvi6g0813 448 FunFam Non-specific serine/threonine protein kinase 2 289 - -
Vvi6g0813 448 Pfam NAF domain 312 370 IPR004041 GO:0007165
Vvi6g0813 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vvi6g0813 448 Gene3D Transferase(Phosphotransferase) domain 1 92 291 - -
Vvi6g0813 448 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0813 448 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0813 Vvi-Chr6 8606375 8607721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0813 1 442 CBL-interacting serine-threonine protein kinases AT5G58380 69.383 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi6g0813 Pkinase 1.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0813 - - vvi:100244972 817.764