Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0809 ATGGGAAGGAGACAGTTGCTGGGGCCTCCTGGGACCTTGAACACTATCACCCCTTGTGCTGCATGTAAGCTTCTGAGAAGAAGATGTGCTGAAGAGTGCCCTTTCTCCCCCTATTTCTCCCCCCATGAACCTCACAAGTTTGCTGCTGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCCAAGATGCTCATGGATGTTGCAGAGAACCAAAGAGCAGATGCCGTGAACAGCCTGGTTTTTGAAGCAAACTTGAGGCTCAGAGATCCAGTCTATGGATGCATGGGTGCAATCTCAGCTTTACAACATCAAGTTCATTCTCTACAAACCGAACTTAATGCAGTGAAAGCTGAGATACTGAAATACAAGTATAGAGAAGCTGCTTCCACCATCATTTCTTCTAGTCATGCTGCTCTAGTTTCTTCGGAGTCCGATTCGATATCTGCAGTTTCACTGCCATCATCTCTTCCTCCACCTCCTCTACCTCTACCCCCACCCACACCATCAGTTGTTTCTTCTTCACCTCCTTCTGCATCTTCTTTGTATACAATACTGCCTTCAAGCACAACAGGCTATAGCTCTATTACAAGTGATAACATTCCATACTTCGACTGA 612 0.4624 MGRRQLLGPPGTLNTITPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMDVAENQRADAVNSLVFEANLRLRDPVYGCMGAISALQHQVHSLQTELNAVKAEILKYKYREAASTIISSSHAALVSSESDSISAVSLPSSLPPPPLPLPPPTPSVVSSSPPSASSLYTILPSSTTGYSSITSDNIPYFD* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0809 203 Coils Coil 97 117 - -
Vvi6g0809 203 MobiDBLite consensus disorder prediction 152 171 - -
Vvi6g0809 203 MobiDBLite consensus disorder prediction 150 177 - -
Vvi6g0809 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 147 - -
Vvi6g0809 203 ProSiteProfiles LOB domain profile. 17 118 IPR004883 -
Vvi6g0809 203 Pfam Lateral organ boundaries (LOB) domain 18 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0809 Vvi-Chr6 8584865 8585566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0809 1 132 AS2 family AT2G30340 78.358 3.85e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi6g0809 LOB 8.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0809 - - vvi:100262112 327.405