Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0800 ATGATTTCTAGGGAGCAAAAGAGAGCTGCCATGTTCAAGAAGCTGGAACTCCTTCGTTCTATCACCAACTCCCATGCACACAGCAAAACCTCAATTCTATTGGATGCATCAAAGTACATAGAAGAACTGAAGCAAAAGGTCGAAAGACTGAATCAAGAAGTTGCCGTGGCACAAAACTCCAGTGATGAACAAATTCCAATGCCTGTGGTTAGAGTGGAAGCTAAAGAAAAGGGTTATCTGATTAATGTACTCACAGAGAGTAGCTGCCCAGGTCTGCTTGTTTTCATATTAGAAGCCTTTGAGGAACTAGGCCTTGAAGTGCTCCAAGCTAGGGTTTCTTGTTCAAGCAGTTTCCATCTAGAAGCAGTTGGAGGAAAAGAAAATACTCAAGGACAAGTTGAACATGTAGATGCTCAGGTCGTGAAACAAGCAGTTTTACGAGCTATCGAGAACTGGAACGAAAGCAGCGAGCAAGAATGA 480 0.4292 MISREQKRAAMFKKLELLRSITNSHAHSKTSILLDASKYIEELKQKVERLNQEVAVAQNSSDEQIPMPVVRVEAKEKGYLINVLTESSCPGLLVFILEAFEELGLEVLQARVSCSSSFHLEAVGGKENTQGQVEHVDAQVVKQAVLRAIENWNESSEQE* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0800 159 Gene3D - 9 64 IPR036638 GO:0046983
Vvi6g0800 159 Coils Coil 33 60 - -
Vvi6g0800 159 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 153 - -
Vvi6g0800 159 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 63 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0800 Vvi-Chr6 8496603 8497924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0800 14 147 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 31.724 6.67e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0800 - - vvi:100241616 305.449