Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0782 ATGCTTTCAGGGGACATTCCTCCAAATCAATCCATTTACATCAAGAATCTCAACGAAAAGGTTAAGAAAGAAGAATTGAAAAGATCTCTCTATTGCTTATTTTCTCAATATGGAAGGATTTTGGATGTTGTTGCCTTGAAGACGCCTAAGCTTCGAGGACAAGCATGGGTTGTGTTTAGTGAAGTTACAGCTGCCAGTAATGCAGTTCGACAAATGCAAAACTTTCCTTTTTATGATAAGCCTATGCGGGTACAATATGCCAAAACAAAGTCAGATTGTGTTGCTAAAGCTGATGGAACCTTTGTTCCGAGAGAAAAGAAAAAGAAGCAAGAAGAAAAAGCTGAAAAGAAACGACGTGCTGAAGAAGCACAGCAATCTGGTAATGCTAATGGTAGAAATGCTGAAACTAATGGTGGCCCAACTCCCCCCTTCCGACAAGGAAACCAGGGCGCACGAGAACCTGAGGCAGCCCCAAACAACATACTTTTTATTCAGAATTTGCCCCACCAGACAACAAGTATGATGCTGCAAGTGCTCTTCCAACAATACCCGGGTTTCAGGGAAGTCCGAATGATTGAAGCAAAGCCAGGCATTGCCTTTGTAGAATTTGAGGATGATGTGCAGTCCAGTATGGCCATGGAGGCACTTCAGGGCTTCAAAATCACTCCTCAGAACCCCATGGCCATAGCTTATGCCAAGAAGTAA 705 0.4312 MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRAEEAQQSGNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0782 234 Gene3D - 150 234 IPR012677 -
Vvi6g0782 234 MobiDBLite consensus disorder prediction 124 144 - -
Vvi6g0782 234 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Vvi6g0782 234 Coils Coil 104 126 - -
Vvi6g0782 234 CDD RRM2_U1A_like 158 230 - -
Vvi6g0782 234 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 234 IPR000504 GO:0003723
Vvi6g0782 234 CDD RRM1_U1A_like 12 88 - -
Vvi6g0782 234 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 10 89 - -
Vvi6g0782 234 MobiDBLite consensus disorder prediction 101 153 - -
Vvi6g0782 234 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Vvi6g0782 234 Gene3D - 4 118 IPR012677 -
Vvi6g0782 234 SMART rrm1_1 161 230 IPR000504 GO:0003723
Vvi6g0782 234 SMART rrm1_1 11 85 IPR000504 GO:0003723
Vvi6g0782 234 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Vvi6g0782 234 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 221 IPR000504 GO:0003723
Vvi6g0782 234 FunFam U2 small nuclear ribonucleoprotein B'' 151 234 - -
Vvi6g0782 234 SUPERFAMILY RNA-binding domain, RBD 8 221 IPR035979 GO:0003676
Vvi6g0782 234 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0782 Vvi-Chr6 8305812 8309256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0782 3 234 Eukaryotic Initiation Factors Gene Family AT1G71770 21.849 4.30e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0782 K11094 - vvi:100248478 440.269