Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0779 ATGGGTTCTTCCTCTGGGAGCTTAGAGACCTCTGCAAACTCGCATCCCCTTTTCTCTTTCTCCTCTTTCATGTCCACTTCCTACTCCGACCTCCTCACGTCCGCCGACGAGGATCCCGTCACCACCACCACTGGTGACAAGGGTGCCGTGGGGAGGGGGCTTTCGGATCGAATTGCAGAGAGGACGGGGTCCGGAGTGCCGAAGTTCAAGTCAATTCCTCCGCCTTCGCTGCCCATCTCCCCGCCTCCGATCTCTCCTTCTTCTTACTTTTCTATTCCTGCAGGGTTGAGCCCAGCTGAACTTCTCGACTCGCCTGTGCTTCTCTCCACTTCTAACATTCTGCCTTCTCCGACAACAGGAACTTTTCCATCTCAGGGCTTCAATTGGAGGAGTAATTCGAACAGCAACCAGCAGGATGTCAAAAGGGAAGATAAAAACTACCTAGATTTTTCGTTCCAACCCCAGGCAAGGCCTTCCACGACTTCAGCAAGCATGTTTCAGCCTTCAACCACCACGATTACTACTGAACAAGCCTTGAGAGGACAGCAACCAGCTTGGAGTTTTCAAGAACCAACCAAGCAAGATAGTTTTTCATCAGAAAAAACTACGGTGAAATCTGAATTTGGTTCCTACCAGAGCTTCTCCCCTGAGATTGCCACGATCCAAACTAACACTCAGAGCAACGGAAACGGCAACAATGGATTCCAATCGGATTATGGCAGTTACCACGCATCATCTCAGTCAATTAGAGAGCAGAGAAGATCAGAGGACGGGTACAATTGGAGGAAATATGGGCAGAAACAAGTGAAAGGAAGCGAAAACCCGAGAAGCTATTACAAGTGCACATACCCCAATTGCCCAACTAAGAAGAAAGTGGAAAGATCCTTGGAAGGCCAGGTCACTGAGATTGTCTACAAAGGTACTCATAACCATCCCAAGCCTCAGTCTACCAGGAGATCATCATTATCATCTTCTCAAACAATTCAAGCTTCCAATCCTCCCAACAATGAAGTTCCTGATCAGCCATTTGTGGCGCATGGCACTGGACAAATGGATTCCGTTGCAACACCAGAGAATTCATCAATCTCCATGGGGGATGATGACTTTGAGCAGAGCTCTCAGAAGAGTAAATCAGGAGGAGATGACTTCGATGAAGATGAACCTGAGGCCAAAAGATGGAAAAAGGAGAGTGAAAATGAAGGTATATCAGCCCCTGGGAGTAGAACAGTCAGAGAACCTAGAGTTGTTGTTCAAACAACCAGTGACATCGATATCCTCGACGATGGCTATAGATGGAGGAAATATGGACAGAAAGTTGTCAAGGGAAATCCAAATCCCAGGAGCTACTATAAGTGCACGAACCCAGGATGTCCCGTGAGAAAGCATGTCGAGAGAGCCTCCCACGACCTCAGGGCAGTGATAACAACCTACGAGGGGAAGCACAACCATGATGTGCCGGCAGCGCGAGGCAGCGGCAGCCACTCCGTCAACAGGCCATTGCCATTGCCCGACACCACCGCCGCCGCCACCACCAACAACAATATGCCAATGGCAATCAGGCCTTCAATCATGACCCATCTCCCCAACAACTCAACCACCAACCCTCTTCGCCATGTCAGGCACCCCACATCAGAAGCCCAAGCAGCACCCTTCACGCTAGAGATGCTGCAGAGCCCTGATGGCTTCGGATTCTCCAGCTTCGGCAACTCCATGGCCACTTACATGAACCAGCCACAGCACCAGGACAATGTGTTCTCCAGAACCAAAGAAGAGCCCAGAGACGACATGTTATTCGAGTCTCTGCTCTGTTGA 1812 0.4994 MGSSSGSLETSANSHPLFSFSSFMSTSYSDLLTSADEDPVTTTTGDKGAVGRGLSDRIAERTGSGVPKFKSIPPPSLPISPPPISPSSYFSIPAGLSPAELLDSPVLLSTSNILPSPTTGTFPSQGFNWRSNSNSNQQDVKREDKNYLDFSFQPQARPSTTSASMFQPSTTTITTEQALRGQQPAWSFQEPTKQDSFSSEKTTVKSEFGSYQSFSPEIATIQTNTQSNGNGNNGFQSDYGSYHASSQSIREQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQSTRRSSLSSSQTIQASNPPNNEVPDQPFVAHGTGQMDSVATPENSSISMGDDDFEQSSQKSKSGGDDFDEDEPEAKRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLPLPDTTAAATTNNNMPMAIRPSIMTHLPNNSTTNPLRHVRHPTSEAQAAPFTLEMLQSPDGFGFSSFGNSMATYMNQPQHQDNVFSRTKEEPRDDMLFESLLC* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0779 603 MobiDBLite consensus disorder prediction 352 369 - -
Vvi6g0779 603 MobiDBLite consensus disorder prediction 119 136 - -
Vvi6g0779 603 MobiDBLite consensus disorder prediction 310 338 - -
Vvi6g0779 603 SMART WRKY_cls 255 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g0779 603 SMART WRKY_cls 426 485 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g0779 603 Gene3D WRKY domain 241 315 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi6g0779 603 ProSiteProfiles WRKY domain profile. 421 486 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g0779 603 MobiDBLite consensus disorder prediction 249 263 - -
Vvi6g0779 603 SUPERFAMILY WRKY DNA-binding domain 251 314 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi6g0779 603 Gene3D WRKY domain 413 479 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi6g0779 603 MobiDBLite consensus disorder prediction 34 80 - -
Vvi6g0779 603 MobiDBLite consensus disorder prediction 223 248 - -
Vvi6g0779 603 MobiDBLite consensus disorder prediction 176 199 - -
Vvi6g0779 603 FunFam WRKY transcription factor 244 315 - -
Vvi6g0779 603 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 102 517 IPR044810 GO:0003700
Vvi6g0779 603 MobiDBLite consensus disorder prediction 223 278 - -
Vvi6g0779 603 Pfam WRKY DNA -binding domain 427 483 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g0779 603 Pfam WRKY DNA -binding domain 256 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g0779 603 ProSiteProfiles WRKY domain profile. 250 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g0779 603 FunFam WRKY transcription factor 33 413 479 - -
Vvi6g0779 603 MobiDBLite consensus disorder prediction 305 412 - -
Vvi6g0779 603 SUPERFAMILY WRKY DNA-binding domain 418 486 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi6g0779 603 MobiDBLite consensus disorder prediction 119 140 - -
Vvi6g0779 603 MobiDBLite consensus disorder prediction 370 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0779 Vvi-Chr6 8290278 8292826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0779 66 602 WRKY Transcription Factor Family AT2G38470 47.378 1.33e-120 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi6g0779 WRKY 3.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0779 K13424 - vvi:100243352 1140.18