Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0763 ATGGCGACCGACGCCACGCCCAAATTCCAAAACCGCGATTTTCGGCCGGTTCAGCCCGATTTCCACCCCGAAATCACTATGTCGGCTCACGACGGGCTCCATTTTTGGCAGTTCATGGTCGCCGGGTCCATTGCGGGTTGCGTCGAGCACATGGCGATGTTTCCGGTGGACACCATTAAGACCCGTATGCAAGTTCTTGGGCCGTGCCCAATTAAATCGGTCAGCCTTAGCCACGCCCTCCGGTCGATTTTGAAGACGGAAGGGCCCTCTGGCCTTTACCGGGGAATCGGCGCAATGGGTCTCGGCGCCGGACCGGCACATGCCGTGTATTTTTCGATTTATGAGATATTTAAGAAGTCTTTATCCGGTGGGAATCCGAATAATTCGGCCGCCCACGCCATCTCCGGCGTATTTGCGACGGTGGCAAGCGATGCGGTGTTTACGCCCATGGATATGGTGAAGCAGAGATTGCAGCTGAGTAGTAGTCCATATAAGGGGGTTTTGGATTGTGTGACGAGGGTTTTGAGAGAAGAGGGGTTTAAAGCTTTTTATGCTTCGTATAGGACTACTGTGTTGATGAATGCTCCCTTCACAGCAGTGCATTTTTCCACGTATGAGGCTGCAAAAAGGGGCTTGATGGAGGTTTCTCCTGACAGCGCCGATGATAACCGAGTGGTGGTTCATGCTACTGCTGGGGCTGCAGCTGGGGCATTGGCTGCTCTCTTGACAACACCGCTTGATGTGGTGAAGACTCAATTACAATGCCAAGGGATCTGCGGATGTGATAGATATAGTAGTGGTTCGATTAGGGACGTTCTTCGGACAATAGTGAAGAAGGATGGATACAGAGGGCTCATGAGAGGATGGATTCCAAGGATGCTCTTCCATGCTCCTGCTGCTGCAATATGCTGGTCTACATATGAAGCCTGGAAATCCATCTTCCAAGAGCTCAATGCTAAAAGTGATAGTGATGGAGGCACCTGA 984 0.5173 MATDATPKFQNRDFRPVQPDFHPEITMSAHDGLHFWQFMVAGSIAGCVEHMAMFPVDTIKTRMQVLGPCPIKSVSLSHALRSILKTEGPSGLYRGIGAMGLGAGPAHAVYFSIYEIFKKSLSGGNPNNSAAHAISGVFATVASDAVFTPMDMVKQRLQLSSSPYKGVLDCVTRVLREEGFKAFYASYRTTVLMNAPFTAVHFSTYEAAKRGLMEVSPDSADDNRVVVHATAGAAAGALAALLTTPLDVVKTQLQCQGICGCDRYSSGSIRDVLRTIVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAWKSIFQELNAKSDSDGGT* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0763 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 33 120 IPR018108 -
Vvi6g0763 327 Gene3D Mitochondrial carrier domain 14 161 IPR023395 -
Vvi6g0763 327 SUPERFAMILY Mitochondrial carrier 31 308 IPR023395 -
Vvi6g0763 327 Gene3D Mitochondrial carrier domain 162 325 IPR023395 -
Vvi6g0763 327 FunFam Mitochondrial RNA-splicing protein MRS3 162 325 - -
Vvi6g0763 327 PANTHER MITOFERRIN-1-RELATED 29 316 - -
Vvi6g0763 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 127 211 IPR018108 -
Vvi6g0763 327 PRINTS Mitochondrial carrier protein signature 51 65 IPR002067 GO:0055085
Vvi6g0763 327 PRINTS Mitochondrial carrier protein signature 184 202 IPR002067 GO:0055085
Vvi6g0763 327 PRINTS Mitochondrial carrier protein signature 232 254 IPR002067 GO:0055085
Vvi6g0763 327 PRINTS Mitochondrial carrier protein signature 38 51 IPR002067 GO:0055085
Vvi6g0763 327 PRINTS Mitochondrial carrier protein signature 142 160 IPR002067 GO:0055085
Vvi6g0763 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 223 313 IPR018108 -
Vvi6g0763 327 Pfam Mitochondrial carrier protein 33 122 IPR018108 -
Vvi6g0763 327 Pfam Mitochondrial carrier protein 223 316 IPR018108 -
Vvi6g0763 327 Pfam Mitochondrial carrier protein 128 214 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0763 Vvi-Chr6 8129329 8133089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0763 134 324 Chloroplast and Mitochondria Gene Families AT1G07030 28.351 5.65e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0763 K15113 - vvi:100853238 647.121