Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0760 ATGAGACCAAACAACATTCTCGTAAACCATGATTACGAAGCACTGCTAGAAGATTTTGGTCTTGCAAGAACCCAACAAGAAGACTCAGATCATTCCTCAGAGACGATAGTTGTTAGGACATTGGGATACGTTGCACCAGAATATGCAGAAAGTGGGAAAGCATACAAAAGGACTGATGTTTATTCCTTCGGGGTGGTGCTGCTACAGTTGATCACTGGGCTGGAGACAACAGACAAGGAACTAAAAGGGAAAAGCCTAGTAGAGTGGGCAAGGCCACTACTGAAAGAAGGGAACTACCCAGATTTAATTGACAAGAGGATTGTGGATTCTCATGATGTCCACCAACTCTTATGGATGGTTTGCGTGGCAGAAAAATGTCTTAGCAAGGATCCTCATAAGCAATTACCTATGGAAAATGTATGTGTAGCCTAG 432 0.4306 MRPNNILVNHDYEALLEDFGLARTQQEDSDHSSETIVVRTLGYVAPEYAESGKAYKRTDVYSFGVVLLQLITGLETTDKELKGKSLVEWARPLLKEGNYPDLIDKRIVDSHDVHQLLWMVCVAEKCLSKDPHKQLPMENVCVA* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0760 143 SUPERFAMILY Protein kinase-like (PK-like) 2 141 IPR011009 -
Vvi6g0760 143 ProSiteProfiles Protein kinase domain profile. 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0760 143 Gene3D Transferase(Phosphotransferase) domain 1 1 143 - -
Vvi6g0760 143 Pfam Protein kinase domain 2 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0760 143 PANTHER OS01G0253100 PROTEIN 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0760 Vvi-Chr6 8057060 8057999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0760 1 143 Trihelix Transcription Factor Family AT1G70460 41.611 2.33e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vvi6g0760 Pkinase 8.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0760 - - vvi:100252220 269.24