Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0749 ATGGGCGGATCTTCTCCCTGCGCTTCCTGCAAGTTGTTGAGACGCCGCTGCGCCAAGGACTGCATCTTTGCTCCTTACTTCCCTTCCGATGACCCTCACAAATTTGCCATTGTTCACAAGGTTTTCGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTTCCCGTTCACCAGAGGATAGATGCAGTGAGCAGTTTAGTTTATGAAGCAAATGCAAGAGTGCGAGACCCGGTTTATGGATGTGTTGGGGCGATTTCTTACTTGCAGAATCAAGTATCTCAGCTACAAATGCAGCTGGCAGTGGCTCAAACCGAGATACTTTGCATCCAGATGCAGCAAGAGGAGCCTGCCTTACCAACTCAGATGGATCAAGATGAGAAATCGCTTCTTCTATCCAATAACAGCTTCAACAACCTTCAACACTACCTCAGCTTTGCTTCTTCCAGCAATGTAATCCAAGATCCTCTAAAGAGAGAGTCTCTTTGGACCTAG 492 0.4736 MGGSSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRIDAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQTEILCIQMQQEEPALPTQMDQDEKSLLLSNNSFNNLQHYLSFASSSNVIQDPLKRESLWT* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0749 163 Coils Coil 85 105 - -
Vvi6g0749 163 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Vvi6g0749 163 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Vvi6g0749 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0749 Vvi-Chr6 7971884 7972497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0749 3 163 AS2 family AT2G30130 67.692 9.55e-83 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi6g0749 LOB 1.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0749 - - vvi:100251897 326.25