Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0731 ATGCTTTCTGAATATCAGGTTGATGAAAACCAGCTATCTAGTGCTGCTTCAGGACCAACTTGCAAAAGTAGATCTATTTCTGGGGACACTGCTCAACCTCGAGATGTATCTTATAGGAGGGTGCTGCAGGTGGTGGATGCTGTGGGTCCACCCAAAGAAAGGGAAAAAAATGCGAAAAGTGGATTTGAGTCATTACCATTGTCTTCACCTTCTTTGTCACCATCGCCCTCAGCTTCTTTGTCACCATCATCCTCAGCTTCTTTGTCACTATCACCCTCACCTTCTTTTTCATCATCACTATCACCATTTTTACCCTCAGACTCACCCTCGGCTCCTCCATCACCATCTCCAGCAGAGTTTTCGTTATCTTCCCCTGCAGCATCTCCCTTTACAAAATTTTGGCCGGGTCCACTCTCACCCAAACTACCACCAAGTCCAGCTTCACCAGTTCCATCAAATCCACCAATGATTGTTTCTGCACCCCCATCCAATTCAGCTCCAGTGCCTTCCCCTGCTCCAGCTCCTAGTCCAATGCTCAATAAAAGTTCTTATGGGAAGCATTATACAGTTCTAATTTTGTCTGGAGTTTTGGGGAGTTCTTTAGTCATATTTATTTCAGCCATGGGCATTATCTTCTGTAGAAGCCATAAGGTGGTTACCGTCAAGCCTTGGGCCACAGGTCTAAGCGGGCAGCTGCAGAAAGCATTTGTAACAGGTGTACCAAAGCTCAATCGAGCAGAACTCGAAACAGCTTGTGAAGATTTCAGCAATATAATTGGTTCTCTATCAGATGGCACAGTGTACAAAGGAACTCTTTCAAATGGAGTTGAAATAGCAGTGACATCTAGTGCAGTGGCATCTCTTGGAGACTGGTCAAAGAATTTAGAAGCCCAGTTCAGAAAGAAGATAGACACGTTATCAAAAGTGAACCACAAGAATTTTGTGAACCTTATTGGGTTTTGTGAAGAGGATAAGCCTTTTACGAGAATGATGGTTTTTGAATATGCTCCTAACGGAACGCTCTTTGAGCATCTGCACATAAAGGAAGCAGAGCACTTAGACTGGGGAATGCGGCTGCGGATAGCTATGGGCTTGGCATACTGCCTTGAATATATGCACCAGCTGAATCCACCCATAGCCCACCAAAAGCTACAATCTTCCTCTATATATCTGACCGAAGATTATGCAGCAAAAATATCAGACTTCAGTTTCTGGAATGAGGTAACTGCAGCAAAGATGGGATCAGTTGCCATGGAGCTCTTGGAAACCCCATCAGCAGATCCAGAGAGTAACGTTTACAGCTTGGGGGTAATATTGTTTGAGATGATAACAGGCAGGCTCCCATACTCTGTGGACAATGGTCCTTCCTCAGATTGGGCATCAGACTATTTGAAAATGGACCAACCCTCAAGAGAAATGGTGGATCCAACTCTAAAATCTTTCCAAGAGGAGGAGCTCAAGAAACTGCTTCAAGTAGTAAAAGATTGTGTCCATCCTGATCCAAGCCAGAGGCCAACAATGAGAGAGGTAACAGCTAGATTGAAGGAGATAACCACAATGGGGCCTGATGGAGCAACACCGAAACTATCTCCTCTTTGGTGGGCAGAACTTGAGATCATGTCTTCGGAAGCAAGTTAA 1638 0.4469 MLSEYQVDENQLSSAASGPTCKSRSISGDTAQPRDVSYRRVLQVVDAVGPPKEREKNAKSGFESLPLSSPSLSPSPSASLSPSSSASLSLSPSPSFSSSLSPFLPSDSPSAPPSPSPAEFSLSSPAASPFTKFWPGPLSPKLPPSPASPVPSNPPMIVSAPPSNSAPVPSPAPAPSPMLNKSSYGKHYTVLILSGVLGSSLVIFISAMGIIFCRSHKVVTVKPWATGLSGQLQKAFVTGVPKLNRAELETACEDFSNIIGSLSDGTVYKGTLSNGVEIAVTSSAVASLGDWSKNLEAQFRKKIDTLSKVNHKNFVNLIGFCEEDKPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWGMRLRIAMGLAYCLEYMHQLNPPIAHQKLQSSSIYLTEDYAAKISDFSFWNEVTAAKMGSVAMELLETPSADPESNVYSLGVILFEMITGRLPYSVDNGPSSDWASDYLKMDQPSREMVDPTLKSFQEEELKKLLQVVKDCVHPDPSQRPTMREVTARLKEITTMGPDGATPKLSPLWWAELEIMSSEAS* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0731 545 Gene3D Transferase(Phosphotransferase) domain 1 336 523 - -
Vvi6g0731 545 ProSiteProfiles Protein kinase domain profile. 253 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0731 545 FunFam Inactive receptor-like serine/threonine-protein kinase 227 335 - -
Vvi6g0731 545 Pfam Protein tyrosine and serine/threonine kinase 256 514 IPR001245 GO:0004672|GO:0006468
Vvi6g0731 545 PANTHER PROTEIN MALE DISCOVERER 2 2 543 - -
Vvi6g0731 545 MobiDBLite consensus disorder prediction 1 123 - -
Vvi6g0731 545 Gene3D Phosphorylase Kinase; domain 1 225 335 - -
Vvi6g0731 545 MobiDBLite consensus disorder prediction 1 32 - -
Vvi6g0731 545 MobiDBLite consensus disorder prediction 62 105 - -
Vvi6g0731 545 MobiDBLite consensus disorder prediction 143 174 - -
Vvi6g0731 545 SUPERFAMILY Protein kinase-like (PK-like) 237 514 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0731 Vvi-Chr6 7771802 7775584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0731 239 516 Receptor kinase-like Gene Family AT3G19300 35.017 2.51e-44 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vvi6g0731 PK_Tyr_Ser-Thr 2.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0731 - - vvi:100262036 904.049