Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0728 ATGGAAAGAAGCATGGAGGAAAGTGGAAAAGATGACGGTTCTAAGACAATTGATCCTTTTGATGGGAAGGATGATGAACAGGAAGATGATGGAAATAAGACTAAAACTAGTGTCAGCTCAGGCAACAGCGTAGTTGATCAGGAGAGTGAAAAGAAGACAACCTCCAATGGGGTGAGGCAGTATGTGAGATCAAAGGTGCCAAGGCTTCGATGGACTCCTAATCTTCATCTTTGTTTTGTTCGAGCCGTAGAGAGACTCGGCGGTCAAGAAAGAGCAACTCCTAAGCTAGTTCAGCAACTGATGAACATCAAGGGCCTCAGCATTGCTCATGTCAAGAGCCATTTACAGATGTATCGAAGCAAGAAGATCGATGATAAGGGTCAAGTTATAAATTCTAGAGGACAATTGCATCCCAACGGGAGTGCAGTTCACAACCTTTGGCAACTTCCCACATTTGAAAGTATTGACCAAAGGGTTGGTTTCAACTTCAGATATAGCAACATTTCGTGGGGTGGACATGGGGACTGGATATCCAGACCTTCTATGCCTGCTATGGGAGCCGGCTTTCATGATTCAGTAGCTGGAAGGATCTCTAAAGGAATCGGCACCAGTCTAAACAGAAGGAATGAGGTTTTCTACATGAATAATGATTGCACTTTGATCACTGAGCAATACAGCAAGAGACCCCATGAATTCCGGGAAGAATTTCAGATGTTTCATGATCGAGAACACATCCGTGCGCTAACCTGCAGATCAATCCCTACAGAAACCACTTGCACAATACAATTGCATAGAAGAGGAGTGCAAGATAAAGGCTTTAACAATTCAATTTCCCTAGATGGGAACTGGAGTAGTAATAGGGAAGATCAAAACTCGCTCAAAAGGAAAGCTCCAGATAGTGATATTGATCTGAATCTGTCACTGAATACAAGATCAAGAAAAGAGGCTAGGAAAGTGGCTTTGGATGAGGAAGAAGTACTGGACAACAATTTATCTCTTTCTTTGTCTTCTCCTTTAAAGAAAGTAATCTATTCTATAGATCTAAACATGCCCTCAAAGTTTGCAGGTTGA 1071 0.423 MERSMEESGKDDGSKTIDPFDGKDDEQEDDGNKTKTSVSSGNSVVDQESEKKTTSNGVRQYVRSKVPRLRWTPNLHLCFVRAVERLGGQERATPKLVQQLMNIKGLSIAHVKSHLQMYRSKKIDDKGQVINSRGQLHPNGSAVHNLWQLPTFESIDQRVGFNFRYSNISWGGHGDWISRPSMPAMGAGFHDSVAGRISKGIGTSLNRRNEVFYMNNDCTLITEQYSKRPHEFREEFQMFHDREHIRALTCRSIPTETTCTIQLHRRGVQDKGFNNSISLDGNWSSNREDQNSLKRKAPDSDIDLNLSLNTRSRKEARKVALDEEEVLDNNLSLSLSSPLKKVIYSIDLNMPSKFAG* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0728 356 Pfam Myb-like DNA-binding domain 69 119 IPR001005 -
Vvi6g0728 356 Gene3D - 66 123 - -
Vvi6g0728 356 SUPERFAMILY Homeodomain-like 65 121 IPR009057 -
Vvi6g0728 356 MobiDBLite consensus disorder prediction 1 33 - -
Vvi6g0728 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 123 IPR017930 -
Vvi6g0728 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 46 209 IPR046955 GO:0003700
Vvi6g0728 356 MobiDBLite consensus disorder prediction 1 59 - -
Vvi6g0728 356 FunFam Myb family transcription factor 65 123 - -
Vvi6g0728 356 NCBIfam myb-like DNA-binding domain, SHAQKYF class 67 122 IPR006447 GO:0003677
Vvi6g0728 356 MobiDBLite consensus disorder prediction 34 59 - -
Vvi6g0728 356 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0728 Vvi-Chr6 7749143 7750648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0728 30 124 G2-like Transcription Factor Family AT2G42660 62.105 2.53e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi6g0728 Myb_DNA-binding 3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0728 - - vvi:100246669 698.738