Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0727 ATGGATGGAATTAACAAAAAGGATCACTTCGGACTTCTGCGACCGCCACCTCCACCGCCCCCAAGGTCGAGGGTGGCTCCATCAACCCAAGTGTTGCCCCCTATTTCATCCCAACATGGAAGGCAACACCAGCTGACAGTCCATAGCGGGGGTGGCAACAGACCACTTCCAGAAGGATTGAGCCGCAGCATCATTCCCCATTATCAATCTCAACACCCTCAAAATCATCCAATCTCTGCCGGTGGTGGTACGGAAGTCTCTTCCAGAACTGAACCAGTGACTGTGCCTGATGCCACCAGGGGTCCTCAACCAGACCCTAACTTGGACGACAGGAGACTCAGACGGTTTGTCCATTTCTGCTTTCACCTCTTTTCTTTTCAAGAACCTATCTATCATTTTGGTCTTGATTCTTCTAATGATGGAGAGCACTCTAAGCATTTTCATATTATGTTGGCTCACAGGCTTCTTTCAAACCGAATTTCCGCCCAGAGATCTAGACTGAGAAGGACCAACTACATTAATGAAATGGAAACCCAGGTGAAAGAATTTGAGGCTCAAATAGCGCAACTCTCTCCAGAAGTGGTATTGATCCAGCGTAAGAAAAAGCTATTGCAAATGGATAATGAGCTCATGAAACAAAAGGAGACAAAGCTGCAAGAACATATAAATCTCAAAAATGCCGAAACCGATACTCACCAAACAGAATTATATCACCTCAGGCAACTCTTTGAACTGCAACAACAGCAAAAACAAGGATGGATGGCCGCTTGGGCATCTGGGCAGGAGGATTATATCGCAAATCAAGGCATGTATTATCAACCTTGGGCAGAGCAGCAGTTTGCTCATCCCAACATGCGCCAACCATCTGGGTCTGAGAAGATGGAGAATTTGGGAATATCCATGACTAAGGTCGATCAGATAGTGGCTTCTGAGGCATATCAACCTGGGCAGGAACGGATGGCAGATCCAGGAAAATATCAGCCTGGTGGGGTAGACTAG 999 0.4685 MDGINKKDHFGLLRPPPPPPPRSRVAPSTQVLPPISSQHGRQHQLTVHSGGGNRPLPEGLSRSIIPHYQSQHPQNHPISAGGGTEVSSRTEPVTVPDATRGPQPDPNLDDRRLRRFVHFCFHLFSFQEPIYHFGLDSSNDGEHSKHFHIMLAHRLLSNRISAQRSRLRRTNYINEMETQVKEFEAQIAQLSPEVVLIQRKKKLLQMDNELMKQKETKLQEHINLKNAETDTHQTELYHLRQLFELQQQQKQGWMAAWASGQEDYIANQGMYYQPWAEQQFAHPNMRQPSGSEKMENLGISMTKVDQIVASEAYQPGQERMADPGKYQPGGVD* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0727 332 SMART brlzneu 145 210 IPR004827 GO:0003700|GO:0006355
Vvi6g0727 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 154 205 IPR004827 GO:0003700|GO:0006355
Vvi6g0727 332 MobiDBLite consensus disorder prediction 64 94 - -
Vvi6g0727 332 MobiDBLite consensus disorder prediction 12 27 - -
Vvi6g0727 332 MobiDBLite consensus disorder prediction 310 332 - -
Vvi6g0727 332 PANTHER BASIC LEUCINE ZIPPER 34 85 261 - -
Vvi6g0727 332 CDD bZIP_plant_RF2 154 202 IPR044759 GO:0003700|GO:0006355
Vvi6g0727 332 MobiDBLite consensus disorder prediction 29 49 - -
Vvi6g0727 332 SUPERFAMILY Leucine zipper domain 153 203 IPR046347 GO:0003700|GO:0006355
Vvi6g0727 332 MobiDBLite consensus disorder prediction 1 109 - -
Vvi6g0727 332 Gene3D - 152 244 - -
Vvi6g0727 332 Coils Coil 173 193 - -
Vvi6g0727 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 154 168 IPR004827 GO:0003700|GO:0006355
Vvi6g0727 332 Pfam bZIP transcription factor 153 202 IPR004827 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0727 154 220 bZIP Transcription Factor Family AT2G42380 41.791 2.31e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi6g0727 bZIP_1 3e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0727 - - vvi:104879605 551.206