Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0719 ATGCCTTCTCAAGCGGATCTGGACCGTCAAATCAAACACCTGATGGATTGTAAGCCTTTACCGAAGGCGGAGTTTGATAAGAAACGCACCTACCAGTCATGGAACACTGGTACCAAGCAAAAGTTGCGGCCGCCTATCTTGAAGACAAGTGCTTTTGGGAGCAGTGACAAGCATCAGGATGCCCATATATGCTGCTTCTTCTCCCATCATCTCTATTTCTCTTCTCTACCACCAATTAATCCAAACAAATTTTCCATCAAAGCTATCTTCATGGCCTCCCAAGACCCCAAAGCCTTTCACTGGTACTTCACCGACGACCACAAAGGCTTCCGTTTCCACAGCCGGGTCCTCCTCCTTTCAATCATTTTCTTCATTTTCATCCTCCTCGTCAACTGCTTATTCCTGTATGGGCAGTGGCTGTGTCGCCGGCGCTCCGCCGCCCATTCTGATCTTGTCTCCAGATCTCTGTCCTATGCAGCAAGAACACTGCAGCCTGCTGATTGTCATGGTCTTGAAGCTGCCATCATAGACAGCTTCCCGATCTTCTTCTACGGTTCATTGGGCGATTCCAATGCATTCAAACATGTTGTGAAAGAATCTGAGTGCTCTATCTGTCTTGGAGTATTCCAAAAGAAGGAAAAAATTAAGATGTTGCCTAGATGTCACCACGCTTATCATGCTGAATGTGTAGACAAGTGGCTGAGAGCTCAGTCTAGTTGCCCTCTTTGTAGAGCCTCTCTCCGAAATGACCCTCTTGATGAATCGGCCATTCCTTGA 777 0.4723 MPSQADLDRQIKHLMDCKPLPKAEFDKKRTYQSWNTGTKQKLRPPILKTSAFGSSDKHQDAHICCFFSHHLYFSSLPPINPNKFSIKAIFMASQDPKAFHWYFTDDHKGFRFHSRVLLLSIIFFIFILLVNCLFLYGQWLCRRRSAAHSDLVSRSLSYAARTLQPADCHGLEAAIIDSFPIFFYGSLGDSNAFKHVVKESECSICLGVFQKKEKIKMLPRCHHAYHAECVDKWLRAQSSCPLCRASLRNDPLDESAIP* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0719 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 252 IPR013083 -
Vvi6g0719 258 SMART ring_2 202 243 IPR001841 -
Vvi6g0719 258 FunFam E3 ubiquitin-protein ligase ATL6 159 250 - -
Vvi6g0719 258 SUPERFAMILY RING/U-box 196 249 - -
Vvi6g0719 258 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 111 247 IPR044675 -
Vvi6g0719 258 ProSiteProfiles Zinc finger RING-type profile. 202 244 IPR001841 -
Vvi6g0719 258 Pfam Ring finger domain 201 244 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0719 Vvi-Chr6 7645740 7649449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0719 92 250 C3H Transcription Factor Family AT3G11110 35.119 5.66e-21 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0719 - - vvi:104879527 348.977