Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0718 ATGCTGAGCCCACCTGATGAATCCTCCATCTCCAGCCCATTCACTGATTTCATGAAGAGTGTGTTCTCATACAATGGCAATGTGATGCTGGCCGCCATTGTATCTTTGCTTCTTGTAATTCTCTTTGTCTTGGTGCTCCACATCTATGCCAAGTGGTTCTTAGCTCATGCCCGTCACAGGAGGAGAAGTTCCGTCTCTGTATCGCATGTTCTTCGTCCTACTCGTTTCCACCATTTCCATACATTCACATTTGAGACCACTCTCTCTGGTTCTCCAACCAAGGGTCTTGATTCATCAGCCATTTCTTCCATCCCTCTCTTTGTTTACAAAGCTGAGGAGCATAAGCATGGATTGGAATGTGTGATTTGTCTGAGTGTCTTCGAGGATGATGATGTTGGGAGGAACCTACCAAAATGCGGTCATGCATTTCATGTTCAGTGTATTGATATGTGGCTGCATTCTCACTCCAATTGTCCTATCTGCCGTGCTCCTGCGGCCTGTGAGAAGAAGGCTGTGAGTCAACCAGACGAGGCCATTTTGCAGGAGGGGAGCATTGAATTATCGGAAGCTTTCATCGGTGACTTGGGGTTGATTGATGAGGACTCTCCAATGGAGCTTGTGGTTGAGATTCCTGACTCTGAGAATGGGAATGCGGTTACTGATATTCATGATTCATTGTCAGCATCTTCTTCCTTGTCATCTCAGTCATCGTCATTGGGTTCTTCCTTGAAGAGAATGCTGAGCAGAAACAGATCAGAACACAAGGTCCATCCATCATCCATTTCCAATGACTCAGAAGCTTGA 804 0.4602 MLSPPDESSISSPFTDFMKSVFSYNGNVMLAAIVSLLLVILFVLVLHIYAKWFLAHARHRRRSSVSVSHVLRPTRFHHFHTFTFETTLSGSPTKGLDSSAISSIPLFVYKAEEHKHGLECVICLSVFEDDDVGRNLPKCGHAFHVQCIDMWLHSHSNCPICRAPAACEKKAVSQPDEAILQEGSIELSEAFIGDLGLIDEDSPMELVVEIPDSENGNAVTDIHDSLSASSSLSSQSSSLGSSLKRMLSRNRSEHKVHPSSISNDSEA* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0718 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 166 IPR013083 -
Vvi6g0718 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 255 - -
Vvi6g0718 267 Pfam Ring finger domain 119 162 IPR001841 -
Vvi6g0718 267 SUPERFAMILY RING/U-box 100 166 - -
Vvi6g0718 267 CDD RING-H2_EL5-like 119 162 - -
Vvi6g0718 267 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Vvi6g0718 267 MobiDBLite consensus disorder prediction 247 261 - -
Vvi6g0718 267 SMART ring_2 120 161 IPR001841 -
Vvi6g0718 267 FunFam RING-H2 finger protein ATL1 83 167 - -
Vvi6g0718 267 MobiDBLite consensus disorder prediction 218 267 - -
Vvi6g0718 267 MobiDBLite consensus disorder prediction 218 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0718 Vvi-Chr6 7643002 7643805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0718 21 251 Rapid Response to Elicitors AT3G16720 35.178 4.10e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0718 - - vvi:100244990 480.715