Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0710 ATGGAAGCTCAGACTGGTGTTTGCTCATGGATCAGAGCCAAGCGTATCGGCGAGGGCTCGTTCGGGACCGTTGATCTTGCCGTGACGAGATCCGACGGCGGCGTTTTCGCCGTGAAGTCGGTTGATCGGAGAGTGGGTCAGGAGTGTCGGGTGGAGGCACTTGAGAACGAGATTGGGGTTCTCCGGCGTCTGTCGTCGCCGTATGTGGTTAGGTATCTGGGGGATGATGTGAGTGTGGAAGGTGGGACGGCGCCGTTTCGGAACCTGCATGTGGAGTATATGCCAGGTGGCACCGTTGCTGACTTGGCGGTGCTTTCCGGCGGGAAGTGTGCTGACGTGGACGAGAGGATTGTGCGGTCGTACACGTATTGCATCGTCTCGTCTTTGAGGTATGTCCACTCGATGGGGCTGGTGCATTGCGACGTGAAAGGGAGGAACGTCTTGGTCGGCGGCGGAGCCGGCGTGGCGAAGCTCGCAGACTTCGGGGCGGCGAGGAGGATAACCGGGGAAGTGGGTCGCCAGAGTAGCGCGATTTTGCCGCGTGGGAGCCCGCTTTGGATGGCGCCGGAGGTCATCCGCCGGGAGTATCAGGGACCGGAGTCCGACGTCTGGTCTCTGGGATGCACAGTCATCGAGATGGTCTCCGGAAAACCAGCGTGGGAAGATTGCGGCGCTGATACTCTCTTTCGAATTGGGTTCTCCGATGAGCTGCCGAAGTTCCCAGCTCAGTTATCGGACTTGGGCCGCGATTTTCTCGAGAAATGCTTGAGGAGAGAGCCCACTGAAAGGTGGAGCTGCGATCAGCTGCTGCAACACCCATTTGTATCATCTTCATCCCCCAATTACATCACAGACGCATCCCCGAGATCGGTCCTCGACTGCTTCAATTTCAGTGATGACGACGATGAAGAAACCGAACTGAACCCCAATCCTGCCCCCAAAAATTCAGTTTCTGCCCATGACAGAATCCGAAAATTAGCTTCAAACAGAGGGCCAGTTTGGGAATCAGAAGATTGGATGGACGTCAGGACATGGATCAGTGACAGAGCAGAAGCAACAGCGGCGAGCTGTTGTGGGGACGAAGGAGAAGGGACCAATTCGGCATATTCGAATTCCACAGGGAAAACAGAGGAAAGTGAGAAAACATTTGCCGAATGTCCGAGTACACGTGGCACTCCCCTATTGGACACTGTTGGTAAGCTAGGGTGCGACCCTGGGTCAAGCTGTGGGTACGAGTCAGGGACGAATGGCTCGGGGGAGAGTAAAGAGACTGGGGTTTACAGCCATTGTAAATTAATATTACTATTATCATATTTGAGAATAATGAGAAGAAATTCACAAATTTTTTATATTTATATTATTTATCTTGAACCTCTGACTTTAATTGACGCATGTGACCGACTCTTTCATAGCTACCAAAATGATATCTCTGATTTGGTATGTTATACAGTTGTACAATCATTATTCCACCACAAATTATTGTCAACCTCCAGTAAATTAATGTAG 1506 0.5199 MEAQTGVCSWIRAKRIGEGSFGTVDLAVTRSDGGVFAVKSVDRRVGQECRVEALENEIGVLRRLSSPYVVRYLGDDVSVEGGTAPFRNLHVEYMPGGTVADLAVLSGGKCADVDERIVRSYTYCIVSSLRYVHSMGLVHCDVKGRNVLVGGGAGVAKLADFGAARRITGEVGRQSSAILPRGSPLWMAPEVIRREYQGPESDVWSLGCTVIEMVSGKPAWEDCGADTLFRIGFSDELPKFPAQLSDLGRDFLEKCLRREPTERWSCDQLLQHPFVSSSSPNYITDASPRSVLDCFNFSDDDDEETELNPNPAPKNSVSAHDRIRKLASNRGPVWESEDWMDVRTWISDRAEATAASCCGDEGEGTNSAYSNSTGKTEESEKTFAECPSTRGTPLLDTVGKLGCDPGSSCGYESGTNGSGESKETGVYSHCKLILLLSYLRIMRRNSQIFYIYIIYLEPLTLIDACDRLFHSYQNDISDLVCYTVVQSLFHHKLLSTSSKLM* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0710 501 MobiDBLite consensus disorder prediction 363 377 - -
Vvi6g0710 501 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 10 355 - -
Vvi6g0710 501 ProSiteProfiles Protein kinase domain profile. 10 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0710 501 FunFam Serine threonine protein kinase putative 8 327 - -
Vvi6g0710 501 Pfam Protein kinase domain 13 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0710 501 MobiDBLite consensus disorder prediction 300 319 - -
Vvi6g0710 501 SMART serkin_6 10 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0710 501 CDD STKc_MAPKKK 9 275 - -
Vvi6g0710 501 MobiDBLite consensus disorder prediction 356 390 - -
Vvi6g0710 501 SUPERFAMILY Protein kinase-like (PK-like) 10 309 IPR011009 -
Vvi6g0710 501 Gene3D Transferase(Phosphotransferase) domain 1 9 327 - -
Vvi6g0710 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0710 Vvi-Chr6 7573772 7575277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0710 10 373 MAP Kinase Kinase Kinase AT1G07150 53.699 1.43e-118 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi6g0710 Pkinase 4.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0710 - - vvi:100241641 1019.99