Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0706 ATGTGTGAAAATTTGAAGGTAAGGAGTGTGGAAGAAGGGCTTCTGGGCTCGTGGCATTCAGGAACTATCATTGGTTGTGATTATTTAGTTCGGAACGTGAAATATAGTGAGATATTGGATGATCGGATGGGAGAAAGATTCTTAGAGTCTGTGAGTGTTTCTGGTGCTATTGAGGGAACAAGTGTTGTTGATACCGACCAGTGTAATCATCGTGGTAGGATAAGGCCATTGCCACCACAATGTGACTTTGGGAAATGGAACCTTCATTATGGACTATGTGTGGATGTGTTTTTTAGGGAGGCTTGGTGGGAAGGTGTGATTTTTGACCATGAAGATGGTTTGGAGAACAGGAAAGTTTTTTTCCCAGATTTGGGTGATGAATTGACAGTTGGAGTTGATAACATTAGGATTACTCAGGACTGGAACGAGGGTACAGCAACTTGGGAGCGACGACGGAATTGGTTGTTTCTTGAGTTGATTGAGGAATATGAACAGGATTGGCCCCTTAATGTCTCACTGAAGCAGATTTGGTATGATGTGAGGGAAAAAAAGGGGTTTGAGAAAGTTAAGGAGTGGACTTGTCCATCAAATGCTCTATGGAGAGAGTTGGTTCGGGAGGCCATTGCTGACAATTTCAGGATAACTCTAAATAAAATCTGTTCTATGTTGAAGCCTGAAGTGTTGGCTAACTGTCATGCGGTGGAACCAATACGGGGTATTAGCCCATTGGATGGTAGTATGATGATGACTAACAATGATGCTAATGCAACAAATTCAGGGGATTATAGTATTGGACTCGTTGATAAATTGGTTGAAAATGGTGGCTTGGCTACTAGGTTCCAGTATACTGATCCAAAATGTAGTAGCAATCAACATGTCCAGGAGAAGCATGAGGTGGATGGTGTGATTCCTTTTGTGGAGAATAGTGGGTTGGATATGCCCTATCGTGATAAAGAGATGTCTGTTCAACCTCAGCCTTTGTTGGTTATACCTTCTAAACCAAATAAATTGGAGAATTTCACTTTTGATTGCAAAAGTGAAGGATATTCTAATAACCCTTCAGCTAATAGGAAGAATGATTGGAGACGTGTTGATACTGACATACTTCACGGAGCCGAGTCCTGCTTTGATGCAATTATTGAATACGCACTTATTTCTTCTGGGAAGAGGAAACCTCCAAATTCATTAACAGAAAATGTCAGGAAGCACCTTTCATATCTGGGCTGGAAAATTGAGTTTATGAACAAAGATTTTCCTAGATTTCGTTACACCTCCCCTGAAGGGAAGACTTACCTATCTCTTCGACAGGTCTGTCAAGATTTGCGGCGACCTGATGCGGGAATTGATTCTCCAATTTCCCAAGATGACCAGAGAAGTTTGCTTAGTCCATATGATGACCTGGCATTTCCACTCGTTAAATTGCAAGTGAATGATCTGTCAAGTCAGCTTATTGAAAAATCACAAGTGAGTAAGGGAAAATGGACAGTGCCTAGTCATGATGACAGAGTTGATATTGATCATGAATATTGCCCTCAAGCTGTAGTCAACTACTATTTTCTTGGGTTAGACAAGAAAGAACACCATAGCAGGAAGGATGACATTCGGAGTTTGAATTTAAAATCTAAAGCAAAGAAGCACCTCTCATTCATGGGTTGGACATTTTGGTATGCATATAGGAGAGGGAAGCGTGAAATGCGCTACTTCTCACCAAAAGGAAAGTGTTATTATTCTCTTCGTACAGCCTGCAAGGGCTGTATGGATGAAGGTGGAGCTTCTGAAGGTACTTCTACCACTTGGAACCCTGTGAAAACCATGAATGTTAGTGAGGTAGCTTTGGGCCAAGAATTATCTTCTGCCTTGATTGATATGAGAATGCAGAACAGTTTGATAGAACAAAATGTACCATCTGCAAAGTGGCCAATAAAGTCTTCCAGCATATCACAGTTGAAAAGCAAAGAGATTAGTGCAGTTACAAAGAAGAGACATGATGGACTACATGGTGTTACCTCTAATTCGCTTCAATCTTGGACACAATCCACTGGAAAAGATGGATTTGGAATTGGATTAGTAGGTGACAGAGAGTTGAGGCACCCAAAGGACAAAAATGTCTGCTTCTCAAAGTTGAAGAATGGAAAGGGATCTAAAGCTTTGATGAGACTAAATGGTCTAGATGGTACCCGTGTTCTGCGATCTAGAAAAAGAGCACGTCAGGTACTGATTCCTGGTTCATCAAACAACCCAAGGACTATACTTTCTTGGTTGATAGACAACAATGTGGTGCTGCCAAGGGCAAAAGTACACTACAGTAGTCGAAGGGATCATCATCCAATGGCAGACGGGCGGATAACTCGTGATGGGATCAAATGCAGTTGTTGCCAAGAAGTGTTTAGTCTTAGCAGGTTTGAAGCTCATGCTGGCAGCTCTTATCACAGGTCAGCTGCCAATATTTTCTTGGAAGATGGAAGGTCTCTGTTAGAATGCCAAATGCAAATAATACGTGATATTACTGGGAAAGGCTTCACAAAAGAATCGTTTAGTAGGAAGAAGAGCAATGAACGTCACCATGAGAATGACCACATTTGTTCTGTTTGTCACTATGGTGGTGATTTAGTCCTATGTGACCATTGTCCATCCTCATTCCATAAGAGTTGCCTTGGTTTGAAGGTAGGTTGTTTTACACTTCCTGAGGGTGACTGGTTTTGCCCATCCTGTTGTTGTGGAATTTGTGGTGAAAACAAATTTGATGGAGGCAGTGAACAGGATAATGTTGTTTTCAGTTGTTATCAATGCGAACGTCAATATCATGTAGGTTGCCTAAGGAAATGGGGGCATGTTAAGTTGGCAAGTTATCCTAATGGAACTTGGTTTTGCAGTAAACAGTGTAAAAAGATATTTTTGGGCCTTCAGAAGCTTTTAGGGAAATCATTTCCAGTAGGTGTGGATAATTTAACCTGGACCTTGCTGAAACCCATTCGAAGTAAAGGTCTTGAGATTGATTTACCTGATATTGAGGCCTTGACAGAAGTTTACAGCAAGCTCAATATTGCTCTTGGTGTCATGCATGAATGTTTTGAGCCCGTTAAAGAACCTCATACAAGGAGAGATGTTGTTGAAGATGTTATTTTCTGTAGAGGGTCAGATCTCAACCGTTTGAACTTCCAAGGATTCTATACAGTGCTCTTGGAGAGAAATGATGAGCTGATTAGTGTGGCTACTGTAAGGGTATATGGAGAAAAGGTGGCAGAAGTGCCACTTATTGGTACTCGATTTCAATATCGTCGACTAGGAATGTGTCACATTTTGATGAATGAACTTGAAAAGAAACTCATGGAATTAGGAGTGGAGAGGTTGGTGTTGCCAGCTGTTCCTAGTGTGCTAAACACATGGACTACTTCATTTGGTTTTTCAAAGATGACGGATTCTGAAAGACTAAGGTTTTTGGATTACAGTTTCCTGGATTTCCAGGACACGGTAATGTGCCAGAAACTCTTGATGAAGATCCCTTTAGCAAAATCAAACCAATCGACTGGTATGTTTGCCATCCTCTCAGCTACCTTATTGAAGTGCGAATAA 3573 0.4117 MCENLKVRSVEEGLLGSWHSGTIIGCDYLVRNVKYSEILDDRMGERFLESVSVSGAIEGTSVVDTDQCNHRGRIRPLPPQCDFGKWNLHYGLCVDVFFREAWWEGVIFDHEDGLENRKVFFPDLGDELTVGVDNIRITQDWNEGTATWERRRNWLFLELIEEYEQDWPLNVSLKQIWYDVREKKGFEKVKEWTCPSNALWRELVREAIADNFRITLNKICSMLKPEVLANCHAVEPIRGISPLDGSMMMTNNDANATNSGDYSIGLVDKLVENGGLATRFQYTDPKCSSNQHVQEKHEVDGVIPFVENSGLDMPYRDKEMSVQPQPLLVIPSKPNKLENFTFDCKSEGYSNNPSANRKNDWRRVDTDILHGAESCFDAIIEYALISSGKRKPPNSLTENVRKHLSYLGWKIEFMNKDFPRFRYTSPEGKTYLSLRQVCQDLRRPDAGIDSPISQDDQRSLLSPYDDLAFPLVKLQVNDLSSQLIEKSQVSKGKWTVPSHDDRVDIDHEYCPQAVVNYYFLGLDKKEHHSRKDDIRSLNLKSKAKKHLSFMGWTFWYAYRRGKREMRYFSPKGKCYYSLRTACKGCMDEGGASEGTSTTWNPVKTMNVSEVALGQELSSALIDMRMQNSLIEQNVPSAKWPIKSSSISQLKSKEISAVTKKRHDGLHGVTSNSLQSWTQSTGKDGFGIGLVGDRELRHPKDKNVCFSKLKNGKGSKALMRLNGLDGTRVLRSRKRARQVLIPGSSNNPRTILSWLIDNNVVLPRAKVHYSSRRDHHPMADGRITRDGIKCSCCQEVFSLSRFEAHAGSSYHRSAANIFLEDGRSLLECQMQIIRDITGKGFTKESFSRKKSNERHHENDHICSVCHYGGDLVLCDHCPSSFHKSCLGLKVGCFTLPEGDWFCPSCCCGICGENKFDGGSEQDNVVFSCYQCERQYHVGCLRKWGHVKLASYPNGTWFCSKQCKKIFLGLQKLLGKSFPVGVDNLTWTLLKPIRSKGLEIDLPDIEALTEVYSKLNIALGVMHECFEPVKEPHTRRDVVEDVIFCRGSDLNRLNFQGFYTVLLERNDELISVATVRVYGEKVAEVPLIGTRFQYRRLGMCHILMNELEKKLMELGVERLVLPAVPSVLNTWTTSFGFSKMTDSERLRFLDYSFLDFQDTVMCQKLLMKIPLAKSNQSTGMFAILSATLLKCE* 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0706 1190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 906 964 IPR013083 -
Vvi6g0706 1190 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1002 1163 IPR016181 -
Vvi6g0706 1190 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1001 1170 IPR000182 GO:0016747
Vvi6g0706 1190 Gene3D - 998 1148 - -
Vvi6g0706 1190 PANTHER PHD FINGER PROTEIN 12 512 1175 IPR042163 GO:0003714|GO:0045892
Vvi6g0706 1190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 838 905 IPR013083 -
Vvi6g0706 1190 Pfam PHD-finger 860 905 IPR019787 -
Vvi6g0706 1190 Pfam Tify domain binding domain 780 830 IPR032308 -
Vvi6g0706 1190 SMART agenet_At_2 86 143 IPR014002 -
Vvi6g0706 1190 ProSiteProfiles Zinc finger PHD-type profile. 858 907 IPR019787 -
Vvi6g0706 1190 Pfam Agenet domain 7 79 IPR008395 -
Vvi6g0706 1190 SMART PHD_3 906 962 IPR001965 -
Vvi6g0706 1190 SMART PHD_3 860 905 IPR001965 -
Vvi6g0706 1190 SUPERFAMILY FYVE/PHD zinc finger 844 905 IPR011011 -
Vvi6g0706 1190 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vvi6g0706 1190 CDD NAT_SF 1059 1119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0706 Vvi-Chr6 7510826 7517504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0706 367 451 PHD Transcription Factor Family AT5G58610 40.860 1.18e-08 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi6g0706 Agenet 9.5e-08 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0706 - - vvi:100243375 2407.1