Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0705 ATGAATAAAGATATGCCTAGATTTCGTTACACCTCTCCTCAAGGGAAGACTTACCAATCTCTTCGTCAGGTTTGTCTGGATTTGGGAGGACCTGCAATGAGAGCTGATTGTCAAATTTCCCAGGATGAGCAGAGGACTTTGTGTAGTTCACATGATGATGTGAAAAAATCTCAAGTGAGTGAGCAGGAGAAGACAGACCCTTGTCGTGATGATGATCTGGTTGATATTGATCGTGAATATTGCCCACATGCTGTAATAAACTACTATTCGCTTGGATTGGACAAGAAAGATTATAGAAGGAAGGATAGTGTTACCTCGAATTTGATAGCTAAGGCAAAGAAACATCTCTCATTCATGGGGTGGCTGTTTTGGTATGCATATAAGAAAGGGAAGCGGGAATTGCGCTATTGTTCGCCAAAAGGAAGGTGTTATTATTCCCTTCGGACAGCCTGCAAGGCCTGCATGGATGAAGGTGGAGCTTCTGAAGATACTTCTACATGTAGCCCTATGAAAATCATGAACGTCAGTGAGGAATCTGAGGTCCAGGAATTCGTTCCTCCCATGATTGATATGAGAATGCAGAAAAACTTGGTACAACAAAATGTAGAGACTGAAAAGCGGGCTGTAAAGTCTTCCAACAGATCACAATTTAAAAGCAGAAGAATGAAGAGACATGATGGACTCCAATGTGTTGTATCTAATTCTCTTCAACATTATGCACAAATCAATGGAGCTTTGGTGAAATTAAATAATCTAGATGGTAATTATCCGACTCCTGCTTTGCAATCAAGAAAAAGTGCTCATCAGGTGCCAATTCCTGATTCATCAAACAACTCTCAAACTATACTTTCTCAGTTGATAGACAACAATGTGGTGCTGTGTAGGGCAAAGGTACATTACAGTAGTCAAAAGGACCATCATCCAATGCCAGAAGGGAAGATAGCTCGTGATGGGATTAAAAATAGCTGTTGCCAAGAGGTGTTTAGTCCTAGAGGGTTTGAAGCTCATGCTGGCAGTTCTTTCCACCAATCAGATGCCAATATTTTCTTGGAAGATGAAGGATCTCTGTTGGAAGGCCAGAGGCAAATGGTACATCGTATTACTGGGAAAAGCTTCACAAAAGAATCAAGTCATGGGAAGAAGAGCAATGGGGATCAATGTAACAATGACGACATCTGTTCTGTTTGTCACTATGGCGGTGATTTAGTCCTCTGTGATCAGTGTCCATCCTGCTTCCATCAGAGTTGCCTTGGTTTGAAGGAACTTCCTGAGGGAGATTGGTTCTGTCCATCCTGCTGTTGTAGAATTTGTGGCGAAAACAGATTTGATGAATATAGTGAAGAAGATAATTTTAAATTCAGTTGTCATCAATGCGAGCTTCAATATCATGTAGGTTGCCTAAGGAAACAGAGGCATGTTAAGTTGGAAACCTATCCTGATGGAACTAGGTTTTGCAGTACACAATGTGAAAAGATATTTTTGGGCCTCCTGAAGCTTTTAGGAAAACCAATTCCAGTGGGTGTGGATAATCTAACTTGGACTTTGCTGAAACCTACAATAAGTGAATGGTTTGATATGGATGTCCCTGACAACAAGGCCTTGACAGAAGTTTACAGCAAGCTCAATATTGCTCTCAATGTCATGCATGAATGTTTTGAGCCTATTAAAGAACCTCATACAGGGAGAGATCTGGTTGAAGATGTTATTTTCTGTAGAGGGTCAGATCTCAAACGTTTGAACTTCCGAGGATTCTATATTGTGCTGCTGGAGAGAAACGATGAGCTGATTAGTGTTGCTACTATTAGGGTCCATGGAGAAAAGGTGGCAGAAGTACCACTTGTTGGTACCCGATCTCAATATCGTCGACTTGGAATGTGTCGGATTTTGATAAATGAAATTGAAAAGAAGCTCGTGGAATTAGGAGTGGAGAGGCTGACATTACCTGCTGCTCCTAGTGTGCTAGATACATGGGTTACTTCATTTGGTTTTTCCAAGATGACAGATTCTGAGAGACTAACGTTTCTGGATTACACTTTCCTGGATTTCCAGGATACAGTCATGTGCCAGAAATTGTTAATGAAGATCCCTTCAACAAAATCAAGCCAATCTACAGGGTTTGCATAG 2124 0.411 MNKDMPRFRYTSPQGKTYQSLRQVCLDLGGPAMRADCQISQDEQRTLCSSHDDVKKSQVSEQEKTDPCRDDDLVDIDREYCPHAVINYYSLGLDKKDYRRKDSVTSNLIAKAKKHLSFMGWLFWYAYKKGKRELRYCSPKGRCYYSLRTACKACMDEGGASEDTSTCSPMKIMNVSEESEVQEFVPPMIDMRMQKNLVQQNVETEKRAVKSSNRSQFKSRRMKRHDGLQCVVSNSLQHYAQINGALVKLNNLDGNYPTPALQSRKSAHQVPIPDSSNNSQTILSQLIDNNVVLCRAKVHYSSQKDHHPMPEGKIARDGIKNSCCQEVFSPRGFEAHAGSSFHQSDANIFLEDEGSLLEGQRQMVHRITGKSFTKESSHGKKSNGDQCNNDDICSVCHYGGDLVLCDQCPSCFHQSCLGLKELPEGDWFCPSCCCRICGENRFDEYSEEDNFKFSCHQCELQYHVGCLRKQRHVKLETYPDGTRFCSTQCEKIFLGLLKLLGKPIPVGVDNLTWTLLKPTISEWFDMDVPDNKALTEVYSKLNIALNVMHECFEPIKEPHTGRDLVEDVIFCRGSDLKRLNFRGFYIVLLERNDELISVATIRVHGEKVAEVPLVGTRSQYRRLGMCRILINEIEKKLVELGVERLTLPAAPSVLDTWVTSFGFSKMTDSERLTFLDYTFLDFQDTVMCQKLLMKIPSTKSSQSTGFA* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0705 707 PANTHER PHD FINGER PROTEIN 12 61 701 IPR042163 GO:0003714|GO:0045892
Vvi6g0705 707 Pfam PHD-finger 392 434 IPR019787 -
Vvi6g0705 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 492 IPR013083 -
Vvi6g0705 707 CDD NAT_SF 586 647 - -
Vvi6g0705 707 ProSiteProfiles Zinc finger PHD-type profile. 390 435 IPR019787 -
Vvi6g0705 707 Gene3D - 562 676 - -
Vvi6g0705 707 SUPERFAMILY FYVE/PHD zinc finger 379 437 IPR011011 -
Vvi6g0705 707 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 582 677 IPR016181 -
Vvi6g0705 707 Pfam Tify domain binding domain 312 362 IPR032308 -
Vvi6g0705 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 368 434 IPR013083 -
Vvi6g0705 707 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 529 692 IPR000182 GO:0016747
Vvi6g0705 707 SMART PHD_3 434 489 IPR001965 -
Vvi6g0705 707 SMART PHD_3 392 433 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0705 Vvi-Chr6 7499157 7506744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0705 112 635 PHD Transcription Factor Family AT5G58610 40.034 1.65e-112 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi6g0705 TDBD 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0705 - - vvi:104879607 1458.35