Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0699 ATGACGGCGCCGGCGTTGGAATCCATTCTTCGCTCCTTATCGGAACTCTGCCTTTCCGACGATAACTTCGCTTGGGAGAACCCTAGGCGCTTCTCTGCCTACGCCAATCGCCTCCAGCTTGTTCTGAACCAGTTCCTGCGATCGTCGTCGCCGGAGGCTTTGTCTCCGTCCGTACAAACTACCTTGAGAGGGGTTTCTGGTGATCTGTCGAAGGCGGTTGAGGCGGTGTCAGTGTATAGGAACAGAAGCAAAATCTTCGTCCTCATCAACTGTCAGTCTCTGTGCGCGTCCCTTCAGGAGCACACCGTAGCAATCGGAGGATGGTTGGCTCTGCTGGAGTCGACTCTGCCGGAGGGTTCAGATCTTCGCAAGAAGGTCGCCGATCTCTCCCAGGATATGAAACAAGCGCAGTTCAGAGTTTCGGAGAACGAAGAGAGAGTGCACTGTACACTGCAGAAGGAGGGACAAGGCAGGCCGACCAGCAAAGCAGTGCAAAGTGCCATTGTCATGGATTTAGCTCGAGCTCTCGGGATCGAGGCAGATGATCATGCAAAGTTGTCGGAGCAGGTCAAGCTCCTGAAGACGGACTTGGCGAGCTCGAATCCACTTGCAGAAAGGCGGGTTTTGATGTCCCTGGAGAGAATTATGGATAACTGGACTGTTCATCCAGCCACTTCAGAGTGGAACTTGGATTTTGATTTTGAAGAGGATGCCCAAATGTCGCCCTTTAAGAATTTTCTATGCCCATTGACAAAGGAAGTGATGAAGGATCCGGTGGTGTTGGAATCATCTCAGAATTATGAGCGGACTGCAATTGAGTACTGGTTCCGACGATGTATAGAGGATGGTCGGGATCCAACTTGTCCTGTTACGGGGCAGGTGCTCAAGTCTACGGAGATGAAACCAAACATCGGATTGGCTGGCGCAATTGAAGAGTGGGTTAGTAGGAATATTGAAATTCAACTTAAGTCAGCAGTGCAGTGTCTTTCTGAGAATCAACCCCCAGTGGATTCTGTTGAATGGGTTTTGGATGTCATTTATAAGATATCAGAAGAGCACCCATCTAATAGATACAGAGTGAGACATGCAGGTGTTGTTCTTCTTATGGTTAAAGTTCTTAGAAACTGTTCGAAGAGCATGGGAACACATATGAGAGGCAAAGCTCTTATGACTTTGCTTAGCATGGCCAAGGATGAAGAAAGCAAGAACATAATGCTTGGAGAGGGTATCACTAGATTGGCAATACATAGTCTTATTGGGAGTTCAGAGAAAGAGAAAGAGTATGCTGTGAAGTTATTGCTAGAGTTCTCGAGGGATGAAGCTTACTGCACAAAAATTGCATCAGAAAAAGGGGCACTAGTTCTTCTTTCGAGCATGGCAGGAAATCTGGAGCATCCTGCCTTATCTAATCTAGCTGAAGAGGTGCTAAAACAGATGGAGAGGGTGGAGGATAATGTTCAGCATTTGGCAGCAGCTGGAAGATTTGAACCCTTACTTAGCCGGTTATGTGAAGGTACCGATGATGTTAAAATAGAGATGGCTCGTATTATGGGGAGGATGACCCTGACAAATAGCAGTAAGGAACAAATTGCAAGGAAATGTGCTAAAACCCTTGTTCAACTGTTATCTAAGCCAAAAGGAAGAGCTCCAAGCTTGCAAGCATTGTGTAATTTGTCAGTCTTGGATGACAATGCAACCATTCTTGTTGATTCTGCTGTGATTCCAGCTCTTACAGATATTCTTTTCGAAAATATGGATGATTCAGAGCTGAAGGAATTAGCTACATCAATAATTGCAAACATAGTACAGCATCCAGGGCACTGGGAATATTCATCTATTGACAACAAAGGACATTCAATGCAGTCAGAGACAACTGTGTTCCGTCTTTTGGGGCTTCTAGCTCATGTTTCCCCTCAATGTCAAGTATCTGTTCTCCGGATCCTTTATGGAATTTCATCTTCACCCCAGGCTTCAGAGTCAGTAGTTACCCATATAAAGTCTGGGGATGGCATCAAAACCATTATACCATTTCTAGAGCACCCAGAAGTTGAACATAGAATTTATGCTTTCAGGCTTACAAGGATACTCTCTGGAACGTTTGGCGAAGATTTAGCTAATGAACTGAAACCTGCTGACAAGCTTCCCTTATTTAAAGAGAAACTACTTGACAACCAATCCACAGATGGTGAAAGATCCGATGCTGCATGCATACTGGCTAACCTTCCTCTCTCAGAAGATGAAGTAAAAACAGTCCTAGGTTCTAGTTTTGTGGGATGGACAGTTGTTACTCTCAAAGATCGTCTCCGAAGCACCAATTGGAGAACTACTCGATCCTCCTCATGCTTGGAGGAAGGGCTTCTTGGCCTCCTACTCCACTTTACTCAGAGTCCTGATCCGCAAACTGTTAGTGTGGTCAAAGAGCATTCCCTCATGAATATTTTCCGTGAGCAGCTCAACTTCCCTTTAAAACCAAGAGTTAAACAGCTAGCTGCCCTTGGATTGAAAAACTTGTCAGAGTCTCGAAGGACACTAATCAGCACTGGGGACTTAGAAGTGCAACTTTCCCATGGCTTCTGCTCCTCCTTGGTGTTCATGTGTGGGAAGAGGCCTCCAGAACTGCCTGTGTGCGCCATACACAATGTTTCATGTGAAGAAGATAATCAGTTTTGCCTGCTTAGAAGCAATTGCATTAAACCCTTGGTAGATCTTCTAACAGATGAGGACACCAATGTTCAAATTGCTGCAGTGGAGGCACTTTCTACTCTCGTGATAGATACTTCCAACAACTTTAAGAGAGCTGTTGATGAGCTTGAACATCTGGGTGTGGTTGAAGCTGCTATTACTCTTTTTACAGAAGTTCGCCCTGGTATTCTTCAAGAGAGGTTACTTTGGATGATAGAGAGAATATTAAGAGTAGAGAGTGACATTAACCGGCACTCGCTAAATCAGTCTCTGGTCAGGGCCTTGGTAGAAGCCTTTAAGCACGGCAATGCCAATGCAAAGGGGTATGCCCAGGACGCTCTTACCAACCTAAAACAGTTATCAGGAGTCAGTGGAAAGAACTCGAGTCAATCTCGTCCTCGGCGGTAG 3090 0.4566 MTAPALESILRSLSELCLSDDNFAWENPRRFSAYANRLQLVLNQFLRSSSPEALSPSVQTTLRGVSGDLSKAVEAVSVYRNRSKIFVLINCQSLCASLQEHTVAIGGWLALLESTLPEGSDLRKKVADLSQDMKQAQFRVSENEERVHCTLQKEGQGRPTSKAVQSAIVMDLARALGIEADDHAKLSEQVKLLKTDLASSNPLAERRVLMSLERIMDNWTVHPATSEWNLDFDFEEDAQMSPFKNFLCPLTKEVMKDPVVLESSQNYERTAIEYWFRRCIEDGRDPTCPVTGQVLKSTEMKPNIGLAGAIEEWVSRNIEIQLKSAVQCLSENQPPVDSVEWVLDVIYKISEEHPSNRYRVRHAGVVLLMVKVLRNCSKSMGTHMRGKALMTLLSMAKDEESKNIMLGEGITRLAIHSLIGSSEKEKEYAVKLLLEFSRDEAYCTKIASEKGALVLLSSMAGNLEHPALSNLAEEVLKQMERVEDNVQHLAAAGRFEPLLSRLCEGTDDVKIEMARIMGRMTLTNSSKEQIARKCAKTLVQLLSKPKGRAPSLQALCNLSVLDDNATILVDSAVIPALTDILFENMDDSELKELATSIIANIVQHPGHWEYSSIDNKGHSMQSETTVFRLLGLLAHVSPQCQVSVLRILYGISSSPQASESVVTHIKSGDGIKTIIPFLEHPEVEHRIYAFRLTRILSGTFGEDLANELKPADKLPLFKEKLLDNQSTDGERSDAACILANLPLSEDEVKTVLGSSFVGWTVVTLKDRLRSTNWRTTRSSSCLEEGLLGLLLHFTQSPDPQTVSVVKEHSLMNIFREQLNFPLKPRVKQLAALGLKNLSESRRTLISTGDLEVQLSHGFCSSLVFMCGKRPPELPVCAIHNVSCEEDNQFCLLRSNCIKPLVDLLTDEDTNVQIAAVEALSTLVIDTSNNFKRAVDELEHLGVVEAAITLFTEVRPGILQERLLWMIERILRVESDINRHSLNQSLVRALVEAFKHGNANAKGYAQDALTNLKQLSGVSGKNSSQSRPRR* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0699 1029 CDD RING-Ubox_PUB 246 300 IPR045210 -
Vvi6g0699 1029 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 25 1019 - -
Vvi6g0699 1029 Gene3D - 317 479 IPR011989 -
Vvi6g0699 1029 Gene3D - 480 852 IPR011989 -
Vvi6g0699 1029 ProSiteProfiles U-box domain profile. 241 320 IPR003613 GO:0004842|GO:0016567
Vvi6g0699 1029 Pfam Armadillo/beta-catenin-like repeat 886 922 IPR000225 GO:0005515
Vvi6g0699 1029 SMART Ubox_2 245 313 IPR003613 GO:0004842|GO:0016567
Vvi6g0699 1029 Gene3D - 854 1017 IPR011989 -
Vvi6g0699 1029 SMART arm_5 798 839 IPR000225 GO:0005515
Vvi6g0699 1029 SMART arm_5 974 1013 IPR000225 GO:0005515
Vvi6g0699 1029 SMART arm_5 883 924 IPR000225 GO:0005515
Vvi6g0699 1029 SMART arm_5 353 397 IPR000225 GO:0005515
Vvi6g0699 1029 SMART arm_5 523 560 IPR000225 GO:0005515
Vvi6g0699 1029 SMART arm_5 561 603 IPR000225 GO:0005515
Vvi6g0699 1029 Coils Coil 472 492 - -
Vvi6g0699 1029 Pfam U-box domain 245 317 IPR003613 GO:0004842|GO:0016567
Vvi6g0699 1029 SUPERFAMILY ARM repeat 496 937 IPR016024 -
Vvi6g0699 1029 Coils Coil 126 146 - -
Vvi6g0699 1029 SUPERFAMILY ARM repeat 326 543 IPR016024 -
Vvi6g0699 1029 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 316 IPR013083 -
Vvi6g0699 1029 SUPERFAMILY RING/U-box 235 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0699 Vvi-Chr6 7450966 7456604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0699 243 1019 U-box Gene Family AT1G76390 30.050 1.07e-92 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0699 - - vvi:100267204 1995.7