Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0695 ATGGAGGGTGAAGTTCAGAAACAGGAGGCGTTTTGCTGTAATTTTTCTCTTTTGCTGGAATTATCTGCTGCCAATGATCTGATTGGCTTTAGAACTGCTGTTGAAGAAGAGGGCCGTGATGTTGATGAGGCCAGCTTTTGGTATGGGAGGAGAAATGGGTCTAAGAAGATGGGGTTTGAAGAGAGGACACCCCTCATGATCGCTGCCATGTTCGGAAGCAAGGAAGTTTTGAATTATATCCTTGCAACCAACCGTGTTGATGTTAACAGAGCTTGTGGTTCGGACGGTGCCACTGCTCTTCACTGTGCTGTTGCAGGTGCCTCAGCTTCCCTGCCTGAGGTTGTGAAGCTCTTGCTTGATGCTTCTGCAGATGCTAATTGTGTTGATGCTAGGGGGAACCGGCCCGGAGATCTTATTGCTCCTATCCTTAGCTTGACCTTCAATTCAAGGAAGAAGGCTGTGGAGGTCATGCTGAAGGGTAGTAGTAGTATTGGGGAAGCATGTGTATTGTCTGATCAAACGGTGGATGACATGGAAGAGCAGCAACAGCAAGAGATTTCAGTTCAACGGGTTTATGGGACTCCTGAGAAGAAAGAGTATCCTGTTGATCTCTCTCTTCCAGACATTAAAAATGGTATATATGGGACAGATGAGTTCAGAATGTACACATTCAAGGTAAAGCCTTGCTCAAGGGCTTACTCTCACGATTGGACAGAGTGTCCGTTTGTACACCCAGGGGAAAACGCGAGGAGGCGTGATCCACGGAAATATCATTACAGCTGTGTTCCCTGCCCAGAGTTCCGAAAGGGGAGCTGCCGGCAGGGGGATGCCTGTGAGTATGCTCATGGAATTTTTGAGTGCTGGCTTCATCCAGCCCAGTATCGGACCCGTCTCTGCAAAGATGAGACTGGGTGCACTAGAAGGGTTTGTTTCTTTGCTCACAAGCCTGAAGAGCTTCGCCCGTTGTATGCTTCCACAGGTTCAGCAGTGCCATCTCCCAGATCATTCTCAGTGGGAGCTTCTTCTTTGGACATGTCTCCAATTAGCCCGCTTGCCCTTGGTTCTTCGTCTGTCTTGATGCCTCCTACTTCAACACCACCTATGACACCCTCCGGAGTGTCTTCTCCTATGGGTGGAACCATGTGGCAGAACCAGCCTAACATCATACCTCCTAACCTGCAGCTTTCTGGTAGCAGGTTGAAATCTTCATTAAGTGCTAGGGACATGGATTTGGATGTTCTTGGGCTAGAAAGTCATCGTCGCCGGCAGCAGCAGTTGATGGATGAAATGGCTGGACTTTCTTCCCCATCCAGCTGGAACAGTGGCCTGAACACTTCTGCAGCTTTTGCGGCCTCCTCTGGAGATCTAATTGGAGAATTAAATAGGCTTGGAGGAATGAAGCCGACTAACCTTGAAGATATTTTTGGATCTCTCGATCCTACAATTTTGCCTCAATTACAGGGACTTTCAATGGATGCTGCAGCACCCCAGCTGCAGTCTCCCACTGGAATACAGATGCGCCAGAACATTAATCAGCAGCTCCGCTCGAGCTACCCTGCGAGCCTCTCATCTTCACCTGTCAGAGGGTCAGCATCATTTGGGATGGACCCATCTGGCTCTGCGACAGCAGCAGTTTTGAATTCAAGGGCAGCTGCCTTTGCAAAGCGGAGCCAGAGTTTCATTGAGCGAAGTGCTGCTAACCGTCATTCTGGGTTTTCTTCATCTGCTTCTTCTGCAGCTGTAGTGCCTTCCCCACTTTCTGATTGGGGCTCACCTGATGGCAAATTAGACTGGGGTATTCAGGGAGAGGAGCTGAACAAGCTGAGGAAATCGGCTTCTTTTGGGTTCAGAAGCAATGGCAGCAGTTATGCAGCACAAGCAGCCTCTGTGCCAGCAGCTGCGGATGAGCCAGATGTGTCTTGGGTTCAGTCCCTGGTGAAGGAAGCCCCATCAGCAAGACCTGGGCAATTCGGTTATGAGGAGCAGCATCAATATCATCTCAATAGTGGAGGTTCTGAGATACTCCCACCTTGGGTCGAGCAGTTGTGCGTGGAGCAGGAGCAGATGGTGGCATGA 2076 0.4976 MEGEVQKQEAFCCNFSLLLELSAANDLIGFRTAVEEEGRDVDEASFWYGRRNGSKKMGFEERTPLMIAAMFGSKEVLNYILATNRVDVNRACGSDGATALHCAVAGASASLPEVVKLLLDASADANCVDARGNRPGDLIAPILSLTFNSRKKAVEVMLKGSSSIGEACVLSDQTVDDMEEQQQQEISVQRVYGTPEKKEYPVDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRRVCFFAHKPEELRPLYASTGSAVPSPRSFSVGASSLDMSPISPLALGSSSVLMPPTSTPPMTPSGVSSPMGGTMWQNQPNIIPPNLQLSGSRLKSSLSARDMDLDVLGLESHRRRQQQLMDEMAGLSSPSSWNSGLNTSAAFAASSGDLIGELNRLGGMKPTNLEDIFGSLDPTILPQLQGLSMDAAAPQLQSPTGIQMRQNINQQLRSSYPASLSSSPVRGSASFGMDPSGSATAAVLNSRAAAFAKRSQSFIERSAANRHSGFSSSASSAAVVPSPLSDWGSPDGKLDWGIQGEELNKLRKSASFGFRSNGSSYAAQAASVPAAADEPDVSWVQSLVKEAPSARPGQFGYEEQHQYHLNSGGSEILPPWVEQLCVEQEQMVA* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0695 691 Gene3D - 259 321 - -
Vvi6g0695 691 ProSiteProfiles Zinc finger C3H1-type profile. 263 285 IPR000571 GO:0046872
Vvi6g0695 691 Pfam Ankyrin repeats (3 copies) 56 128 IPR002110 GO:0005515
Vvi6g0695 691 ProSiteProfiles Ankyrin repeat profile. 95 130 IPR002110 GO:0005515
Vvi6g0695 691 PANTHER UNKEMPT FAMILY MEMBER 20 648 IPR045234 -
Vvi6g0695 691 ProSiteProfiles Ankyrin repeat region circular profile. 95 129 - -
Vvi6g0695 691 SMART ANK_2a 95 127 IPR002110 GO:0005515
Vvi6g0695 691 SMART ANK_2a 60 90 IPR002110 GO:0005515
Vvi6g0695 691 SMART c3hfinal6 258 284 IPR000571 GO:0046872
Vvi6g0695 691 SMART c3hfinal6 293 316 IPR000571 GO:0046872
Vvi6g0695 691 Gene3D - 18 160 IPR036770 -
Vvi6g0695 691 FunFam Zinc finger CCCH domain-containing protein 66 216 284 - -
Vvi6g0695 691 SUPERFAMILY Ankyrin repeat 58 137 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0695 Vvi-Chr6 7419919 7421994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0695 15 686 C2H2 Transcription Factor Family AT5G12850 40.694 5.36e-151 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi6g0695 Ank_2 8.7e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0695 - - vvi:100265670 1328.15