Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0692 ATGAGAATATCACCCTCCTCCGTCACCATCGCCTTCATTTTCGTTGCCCTCCTCTCCTCACCGGCACTGCCGGTCAACGCCCTCGGCTCCTCCTCCACCATTGCCGTCTCCTATGCCACCGGCACCGTCTGCGGCATCCTCGCCGGCCATCCTTTACAAGAAATTCAATGCTACAGACAAGGCCACATCATCAACCTCCAACCCCAAGTTTCCTACGAAGCCATTTCCGGCGGCCAGAGCTTCTTCTGCGGCCTGAGGTCCGGCGGCTTCAGCCTTCTCTGCTGGGACACCACCTTCAGCAATGCTAGTTTTCGCCCAAAGCGCATATACTATAGTGACAGGGTTGGGTTAACCGATTTAACGGTGGGTAATGCTCAGGTTTGTGCATTGGAGGCCAGCAGTGGAGGGGTCAAATGTTGGAGAGGAGAGAGAGGTGGGTCTATGTTTCCGACGCCGGAAGTGGGTTCAGAGTTTCAGAAAATAACGTCTGGAGGAGGGTTCACATGTGGGATTTTGAAGAACAACAGCAGAGTTTTGTGTTGGGGTGTCAGCACAGTTGGAGCTGAGATTCAAAGACAGTTTGGTGATCTCTCAATGTCGAGCTTAGTTGCTGGCAATTCTCATGCATGTGGGTTGACAGACACAGGGATTTTGGTTTGTAAAGGGAACAATGATACTGGGCAGCTTGGTTTTCCCTCTGGTTCAGCTTTCGAATTCTCAGGTCTTGCATTGGGAGCTAATCATACCTGTGCAATTCAAAGAAGAAATGGTATGGTGGAGTGCTGGGGAGGAGGAACAAAACTATCGGAATTTGGCAGCCAACATATAAAAAACGTTTCCTTTGAATCAATTGTTGCTGGTTTGGATTTCACATGTGGATTGACATCCAGGAACTTATCAGTGATATGCTGGGGACCTGGGTGGACTGGGAAGCGTACTTCAGGGAGTGTCTTTCCACTTGAGATGATCATTCCGGGTCCATGTGTTGAAGCTTCTTGTAGCGTTTGTGGTATGTATCCGAATTCTGAGGTTCTGTGTGATGGGTCTGGGAATATATGTAAGTCTTGTGAATTTGATCTTCCAATTCCATTGCCATTGCCAATTTTGCCGCCACAACCATCGGAAGATTTACAACCAAATTCTCCGGCATCTCCTGCCCCAAACAGGCTGTTGTTGGCCTTTTTGATTGTTGGGTCAATTGGACTTTTTGCAGGCATATGTAGTATTGTCTACTGCCTCTGGACTGGAGTCTGCGCCTTCTTTCACAAGCAGATTTATGATTCTGCACAACCAAACGTCAGCAGGGCCAATGCCGATAGTTTCACGGTGATAGACAATGGTTCCAATGTCCAAGTTTCAAAATCATCCTCCATCAAGCGCCAGAGCTCTCTAGCATTGAGGCGTCAAAGGAGCGGGCCATCATCAAGGGCTGTTGGGGACAGGGCTGAAAATTTTTCTCTATCAGAACTTGCTGCTGCCACTAACATGTTCTCATTGGAAAACAAGATTGGTGGTGGAAGCTTTGGTACGGTTTACAAAGGCAAGCTTGCAGATGGTAGGGAAGTGGCCATCAAAAGGGGAGAGACTGGTTCAAGGATAAAGAAGTTCCAAGAGAAGGAAATTGCATTTGAATCAGAACTAGCATTGTTGTCGCGGCTTCACCACAAGCATTTGGTGGGGCTTGTGGGATTCTGCGAAGAAAATGATGAGAGGCTTCTGGTTTATGAGTACATGAGTAATGGATCTCTCCATGATCATCTGCATAGCAAGAATAATATTCTAGAGAGTAGCAACATTTTAAATTCTTGGAAAATGAGGATTAAAATCGCCTTAGATGCTGCTAGGGGAATTGAGTATCTCCACGATTATGCTGTGCCACCTATAATTCATAGAGACATTAAGTCCTCTAACATTCTTCTTGATGCAAATTGGACTGCAAAAGTATCGGATTTTGGGCTATCATTAATGGGGCCAGACTCTAACCAGGAGTATATGTCAACCAGGGCAGCCGGTACAGTTGGGTATATAGATCCCGAGTACTATGTGCTAAATGTTTTGACAGCAAAGAGTGATGTCTATGGCTTAGGAGTGGTATTGTTAGAGCTTTTGACAGGAAAGAGAGCTGTATTCAAGGAAGAAGTGGAGGGAGCTCTTCCTATTGGGATAGTGGACTATGCAGTACCACAGATAACAGTGGGTGAGCTATGGAGGGTATTGGATATGAGGGTTGGTCCACCAGAGGCAAATGAGGCCGAGGCGGTTGAGCTGATGGCTAACATGGCTATGCATTGTGTGAAGTTGGAGGGAAAGGAAAGGCCCACCATGACTGACATTGTAGCCAATCTGGAGAGGGCACTGGCTCTTTGTGAGGAGAGCCGCGCTAGCATCTCTAGTACTTCATTCTCCATTATCTCAGAATGA 2421 0.4709 MRISPSSVTIAFIFVALLSSPALPVNALGSSSTIAVSYATGTVCGILAGHPLQEIQCYRQGHIINLQPQVSYEAISGGQSFFCGLRSGGFSLLCWDTTFSNASFRPKRIYYSDRVGLTDLTVGNAQVCALEASSGGVKCWRGERGGSMFPTPEVGSEFQKITSGGGFTCGILKNNSRVLCWGVSTVGAEIQRQFGDLSMSSLVAGNSHACGLTDTGILVCKGNNDTGQLGFPSGSAFEFSGLALGANHTCAIQRRNGMVECWGGGTKLSEFGSQHIKNVSFESIVAGLDFTCGLTSRNLSVICWGPGWTGKRTSGSVFPLEMIIPGPCVEASCSVCGMYPNSEVLCDGSGNICKSCEFDLPIPLPLPILPPQPSEDLQPNSPASPAPNRLLLAFLIVGSIGLFAGICSIVYCLWTGVCAFFHKQIYDSAQPNVSRANADSFTVIDNGSNVQVSKSSSIKRQSSLALRRQRSGPSSRAVGDRAENFSLSELAAATNMFSLENKIGGGSFGTVYKGKLADGREVAIKRGETGSRIKKFQEKEIAFESELALLSRLHHKHLVGLVGFCEENDERLLVYEYMSNGSLHDHLHSKNNILESSNILNSWKMRIKIALDAARGIEYLHDYAVPPIIHRDIKSSNILLDANWTAKVSDFGLSLMGPDSNQEYMSTRAAGTVGYIDPEYYVLNVLTAKSDVYGLGVVLLELLTGKRAVFKEEVEGALPIGIVDYAVPQITVGELWRVLDMRVGPPEANEAEAVELMANMAMHCVKLEGKERPTMTDIVANLERALALCEESRASISSTSFSIISE* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0692 806 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 197 793 IPR044815 GO:0004674
Vvi6g0692 806 Pfam Regulator of chromosome condensation (RCC1) repeat 201 228 - -
Vvi6g0692 806 Gene3D Phosphorylase Kinase; domain 1 456 577 - -
Vvi6g0692 806 SMART serkin_6 497 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0692 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Vvi6g0692 806 ProSiteProfiles Protein kinase domain profile. 497 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0692 806 Pfam Protein kinase domain 498 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0692 806 CDD STKc_IRAK 503 784 - -
Vvi6g0692 806 Gene3D - 194 367 IPR009091 -
Vvi6g0692 806 Gene3D - 26 193 IPR009091 -
Vvi6g0692 806 FunFam receptor-like protein kinase FERONIA 439 577 - -
Vvi6g0692 806 FunFam Serine/threonine-protein kinase-like protein CCR4 578 800 - -
Vvi6g0692 806 SUPERFAMILY RCC1/BLIP-II 29 266 IPR009091 -
Vvi6g0692 806 SUPERFAMILY Protein kinase-like (PK-like) 480 782 IPR011009 -
Vvi6g0692 806 Gene3D Transferase(Phosphotransferase) domain 1 578 800 - -
Vvi6g0692 806 ProSitePatterns Protein kinases ATP-binding region signature. 503 535 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0692 Vvi-Chr6 7383811 7386231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0692 7 806 Receptor kinase-like Gene Family AT3G55950 55.664 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vvi6g0692 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0692 - - vvi:100852616 1538.86