Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0685 ATGGCGAGGATGAAGTTGGTGTTGTGGAGTCTGCTACTGTTGGGAACCCTAGCTATCTCTCAGGCAAAGAAGTCGACGGAGAATTTGAAGGAAGTGACTCATAAAGTGTACTTTGATGTCGAGATTGATGGAAAACCAGCTGGTCGTGTTGTTATGGGCCTCTTTGGGAAGACAGTACCAAAAACTGTAGAAAATTTCCGAGCACTGTGCACAGGGGAGAAGGGTATTGGAAGCAGTGGGAAGCCTCTCCATTTTAAGGGGAGTGCATTCCATAGGATTATTCCCAGCTTTATGATCCAGGGTGGTGATTTTACACTTGGTGATGGAAGAGGTGGAGAATCGATTTATGGAGAGAAGTTTGCTGATGAGAATTTTAAACTGAAGCATACTGGTCCAGGGCTTTTGTCAATGGCAAATGCTGGTCCAGACACCAATGGTTCACAGTTCTTCATTACAACTGTGACAACTAGTTGGCTGGATGGAAGACATGTAGTATTTGGAAAGGTGTTATCTGGAATGGATGTGGTTTACAAGATGGAAGCTGAAGGAAGGCAGAGCGGCACGCCCAAGACCAAAGTTGTGATTGCAGACAGTGGTGAACTTCCTCTATAA 612 0.451 MARMKLVLWSLLLLGTLAISQAKKSTENLKEVTHKVYFDVEIDGKPAGRVVMGLFGKTVPKTVENFRALCTGEKGIGSSGKPLHFKGSAFHRIIPSFMIQGGDFTLGDGRGGESIYGEKFADENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKMEAEGRQSGTPKTKVVIADSGELPL* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0685 203 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 35 201 - -
Vvi6g0685 203 SUPERFAMILY Cyclophilin-like 31 201 IPR029000 -
Vvi6g0685 203 CDD cyclophilin_ABH_like 34 199 - -
Vvi6g0685 203 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 85 102 IPR020892 GO:0003755|GO:0006457
Vvi6g0685 203 PIRSF Peptidylpro_ismrse 18 202 IPR024936 GO:0003755
Vvi6g0685 203 Gene3D - 21 202 IPR029000 -
Vvi6g0685 203 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 37 200 IPR002130 GO:0000413|GO:0003755
Vvi6g0685 203 FunFam Peptidyl-prolyl cis-trans isomerase 29 202 - -
Vvi6g0685 203 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 38 197 IPR002130 GO:0000413|GO:0003755
Vvi6g0685 203 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 90 102 IPR002130 GO:0000413|GO:0003755
Vvi6g0685 203 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 133 148 IPR002130 GO:0000413|GO:0003755
Vvi6g0685 203 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 69 IPR002130 GO:0000413|GO:0003755
Vvi6g0685 203 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 161 176 IPR002130 GO:0000413|GO:0003755
Vvi6g0685 203 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 160 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0685 Vvi-Chr6 7337829 7342997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0685 48 180 U-box Gene Family AT5G67530 47.015 2.36e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0685 K01802 - vvi:100251977 390.193