Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0681 ATGGATTCACAAGAGGTATGGAACTTGGAGAATGGTGAGGTAAAGGGGTTGAGCAACAAGGATGGACCACATTTAATAAGAAACGCCCACACCATGTCCTCTTCATCCTTACGTAAGAGGTCGGATCCGATGCTTCTCCCCAAGGTTAGATGCCGAGTCCTCAGACAATTCCTCAACAATCTTCAAGAGGTCATCCTTGGGACCAAGCTTTGTCTGCTCTTCCCAGCCATTCCTTTAGCAGTCTTAGCGAAGTGTTACCAATTTGGAAGACCTTGGATTTTTGCTCTGAGTTTAATGGGGCTGACACCGCTAGCTGAACGTGTCAGCTTTCTAACTGAACAGATAGCATACTTCACTGGTCCAACAGTTGGAGGGCTTCTCAATGCAACATGTGGTAATGCAACAGAACTGATAATAGCCCTATTTGCCCTTCACCAAAAGAAAATCCTTGTGTTGAAATACTCTCTTCTGGGTTCCATTCTCTCCAACCTCCTCCTTGTTCTTGGGACCTCTCTCTTGTTTGGAGGCTTGGCTAACCTAAAAAAGGAGCAACTTTATGATAGAAAACAAGCTGATGTGAACTCGCTGCTTCTACTGCTGGGATTGCTATGCCATGTGCTTCCTTTGATGTTCAAATACGCTGCATGGACAGACACATTCACAGCCATTTCCACTCTTCAGTTCTCAAGAGCCAGCAGCATTTTGATGCTTACAACATATGTTGCATACCTCATCTTCCAGCTCAAAACCCACCGCCAACTTTTCGAATCACAAGAGGAAGATGAAGATGGTGATGATGAAAAGGCTCTGATTGGATTCTGGAGTGCATTTAGCTGGTTGGTTGGCATGACAGTTATCATAGCACTGTTATCTGAGTATGTTGTGGGCACAATTGAGGCTGCCTCGGATTCCTGGGGCGTTTCTGTTAGCTTTATCAGCATTATTTTGCTGCCAATAGTGGGAAACGCTGCAGAACATGCTGGGTCAATCATATTTGCTTTCAAAAACAAGTTGGACATATCTTTGGGGGTTGCTTTGGGGTCTGCAACACAGATTTCCATGTTTGTGGTTCCACTCTGTGTGATCGTGGCTTGGATCATGGGGGTTGCTATGGATCTTGATTTCAGTCTCCTTGAAACCGGCTCTCTCGCCTTCGCCATCATTATCACAGCCTTCGCTTTGCAGGATGGAACTTCACATTACATGAAAGGAGTGGTTCTTTCTCTTTGCTACATAGTAATAGCTGCATGCTTTTTTGTTCATAAAAATCCAAGTGTCCGTAAGTCCCTTACCAGCAAACTCCTACACTAG 1311 0.4485 MDSQEVWNLENGEVKGLSNKDGPHLIRNAHTMSSSSLRKRSDPMLLPKVRCRVLRQFLNNLQEVILGTKLCLLFPAIPLAVLAKCYQFGRPWIFALSLMGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIALFALHQKKILVLKYSLLGSILSNLLLVLGTSLLFGGLANLKKEQLYDRKQADVNSLLLLLGLLCHVLPLMFKYAAWTDTFTAISTLQFSRASSILMLTTYVAYLIFQLKTHRQLFESQEEDEDGDDEKALIGFWSAFSWLVGMTVIIALLSEYVVGTIEAASDSWGVSVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVALGSATQISMFVVPLCVIVAWIMGVAMDLDFSLLETGSLAFAIIITAFALQDGTSHYMKGVVLSLCYIVIAACFFVHKNPSVRKSLTSKLLH* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0681 436 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 30 424 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vvi6g0681 436 FunFam Vacuolar cation/proton exchanger 121 264 - -
Vvi6g0681 436 NCBIfam calcium/proton exchanger 56 419 - -
Vvi6g0681 436 Pfam Sodium/calcium exchanger protein 277 417 IPR004837 GO:0016020|GO:0055085
Vvi6g0681 436 Pfam Sodium/calcium exchanger protein 92 248 IPR004837 GO:0016020|GO:0055085
Vvi6g0681 436 Gene3D - 267 420 IPR044880 -
Vvi6g0681 436 Gene3D - 121 259 IPR044880 -
Vvi6g0681 436 FunFam Vacuolar cation/proton exchanger 265 420 - -
Vvi6g0681 436 NCBIfam calcium/proton exchanger 75 419 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0681 Vvi-Chr6 7301909 7304370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0681 5 424 Antiporters AT2G38170 66.204 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0681 K07300 - vvi:100243275 791.956