Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0666 ATGAACCCTTTAACTCTTGTGAAACGGATTCAGAAGATTAATTCACAAGAAGCTGCCTTAGGGATTTCGGAAAGCGCTTCATGGCACGCCAAGTACAAGGAATCGGCCTACGTGTTCGTTGGCGGCATTCCGTTTGACCTTACGGAAGGTGATCTCCTCGCAGTTTTTTCCCAATATGGAGAGATTGTTGATGTGAATCTTGTTAGAGACAAGGGGACGGGAAAATCCAAGGGTTTCGCCTTTGTTGCATATGAGGATCAAAGAAGTACAAATCTTGCAGTAGATAATTTGAATGGTGCACAGATTCTTGGGCGAATTATAAGGGTTGATCATGTGAGCAACTATAAAAAGAAAGAAGAAGAAGACGAAGAGACAGAGCGGCAGAAGAGGGAGGCTCGGGGCGTGTGCCGTGCTTTTCAGAGAGGTGAATGTAATCGTGGAGCCGGGTGCAAGTTTTCGCATGATGAGCAAAGAGCTTCAAACACTGGTTGGGGTTCAGAGGATAAAAGTTCCAGGTGGGGACATGACAAGTTTCAGGGTTCAACAAAGAGTGATGGAAGACCTAACAGCATACCAACAAATCGTGTTCATGAGCCTACAGTTGGAGAAGGGCATAGATTTGGCAATAAGGATGCAAGAAGTTCCCGAACAAAGGGCAGTGAGGGGGGAAGAGAAAGCCATCATAGAAGAAGTGAATTGGATATAAGAGACCAAGATGGCAGAGGTCTTGAGAGACAAATGGAACAGAAGGAGAAGGAATTGAATTACAAGGAAGACCAGGATAGGCGAACTACTGAGAGGAGGTCTGGAAGGCCTGATTCAAATCCAGGTGAAGATCATGATAGGAGGGGGGAAGACCAGGATATTAGAGCTACTGAAAGAAGGTCCAGAAGGCATGATTCAAATCCAAGTGAAGATCATGATAGGAGGGGGGAAGACCAGGATATTAGAGCTACTGAAAGAAGGTCCAGAAGGCATGATTTTGAGTCGAATCCGAGAGAAGATGATAGGAAGGAAGAAGACCGGGATAGGCGAGCTACTGAGAGAAGGTCCAGAAGGTCTGAATTTGAGTCAAATCCAAGAGAAGATCATGATAGGAGGGAGGAAAAGAGATCAAGAAGGCATGAGTTGGAATCAAAGCCAAAAGAAGATCATGATAGAAGGGAGGAAAAGCAATCAAGAAGACACGAGTCAGAATCGTATCTAAGAGAAGACCCCCGAGATGAGAGAGGGGACAAGCGGTCAGGCCATAGCAGAGATACTGCTTCCCATCGTCATAGAGAGAGATGA 1290 0.4566 MNPLTLVKRIQKINSQEAALGISESASWHAKYKESAYVFVGGIPFDLTEGDLLAVFSQYGEIVDVNLVRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSNYKKKEEEDEETERQKREARGVCRAFQRGECNRGAGCKFSHDEQRASNTGWGSEDKSSRWGHDKFQGSTKSDGRPNSIPTNRVHEPTVGEGHRFGNKDARSSRTKGSEGGRESHHRRSELDIRDQDGRGLERQMEQKEKELNYKEDQDRRTTERRSGRPDSNPGEDHDRRGEDQDIRATERRSRRHDSNPSEDHDRRGEDQDIRATERRSRRHDFESNPREDDRKEEDRDRRATERRSRRSEFESNPREDHDRREEKRSRRHELESKPKEDHDRREEKQSRRHESESYLREDPRDERGDKRSGHSRDTASHRHRER* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0666 429 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Vvi6g0666 429 CDD RRM_ist3_like 27 115 IPR045844 GO:0000398|GO:0003723
Vvi6g0666 429 Gene3D - 8 126 IPR012677 -
Vvi6g0666 429 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Vvi6g0666 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Vvi6g0666 429 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Vvi6g0666 429 Gene3D - 127 190 - -
Vvi6g0666 429 SMART rrm1_1 37 110 IPR000504 GO:0003723
Vvi6g0666 429 Coils Coil 115 135 - -
Vvi6g0666 429 MobiDBLite consensus disorder prediction 199 429 - -
Vvi6g0666 429 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Vvi6g0666 429 SUPERFAMILY RNA-binding domain, RBD 27 115 IPR035979 GO:0003676
Vvi6g0666 429 Coils Coil 240 260 - -
Vvi6g0666 429 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Vvi6g0666 429 MobiDBLite consensus disorder prediction 147 429 - -
Vvi6g0666 429 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 315 - -
Vvi6g0666 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0666 Vvi-Chr6 7171496 7175753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0666 38 84 C2H2 Transcription Factor Family AT2G19380 42.553 4.65e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0666 K13107 - vvi:100246760 823.928