Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0665 ATGAATTTTAGCTCCTTCAGTGTGATGAAGTTGTGTAAAATGAAGAATGGTGATCACCATCAGAAAGAAGCAGAAGAGATTGCTGGTAAAAATGTGAGGCTCTTTTCCTATAATGCATTGAGATCAGCAACACGGAACTTCCATCCATCTAACCGAATAGGCAGAGGTGGCTTTGGAATTGTTTATAGGGGAGTTTTGAGGGATGGAACTCAAGTTGCTGTGAAGTCTCTCTCTGTTGAATCTAAGCAAGGAAAAAGGGAGTTCTTAACTGAGATTGACATGATTTCAAATATACAACATCCATGCCTTGTTCGACTTATTGGTTGTTGTGTTGGGGGTGGTAGTCGAATGCTGGTCTATGAATATCTGGAGAACAAAAGTCTTTCAAGTGCTTTACTCAGTTCGAAGTCTAAACGAAGTGTTTTAGATTGGCCTAAGAGGGCTGCAATCTGTACAAGCACCGCTCACGGCCTTGCATTTCTTCATGAGGAAGCCGAACCCCGAATTATTCACCGAGATATCAAGGCCAGTAATATACTTCTTGATGGGGACCTTAATCCTAGAATTGGGGATTTTGGGCTGGCCAAACTTTTTCCAGAAAATGTCACTCACATTAGTACTAGAGTGGCAGGAACCATGGGATACATGGCACCGGAGTATGCATTGTCAGGAAGGTTAACAGAAAAGGCTGATGTCTACAGTTTTGGTGTGCTCATGCTTGAAATTATTAGTGGTAGAAGTAGTAGCAAGGCTGCATTTGGGGAGAATCTTCTGGTCCTAGTGGAATGGACATGGAAACTGAAGGAAGACAACAGTCTGTTGGACATGGTTGATCCAGAACTGGTTGAGTACCCTGAGGATGAGGTTTCATGTTTCATCAAGGTGGCACTGCTGTGCATCCAAGCGGTGTCTTGGCAGAGGCCCACCATGACGCAAGTTCTGCAAATGCTCTCCAAAGAGGTCAGCCCGGATTCAATGGCGCTAACACGGCCAGGCTACTACAAGCATTCAGATGGTGGGATTGGCCATTCATGGATGACTTCTTCTGAGGTACCAAAAAGAAAGCAACTGATAAATCCCCTTGTCACTTCGACCCGTGTAAGCAGCTGTTCTGTAAGCATTACACAGGTGCTGCCTAGGTGA 1143 0.4462 MNFSSFSVMKLCKMKNGDHHQKEAEEIAGKNVRLFSYNALRSATRNFHPSNRIGRGGFGIVYRGVLRDGTQVAVKSLSVESKQGKREFLTEIDMISNIQHPCLVRLIGCCVGGGSRMLVYEYLENKSLSSALLSSKSKRSVLDWPKRAAICTSTAHGLAFLHEEAEPRIIHRDIKASNILLDGDLNPRIGDFGLAKLFPENVTHISTRVAGTMGYMAPEYALSGRLTEKADVYSFGVLMLEIISGRSSSKAAFGENLLVLVEWTWKLKEDNSLLDMVDPELVEYPEDEVSCFIKVALLCIQAVSWQRPTMTQVLQMLSKEVSPDSMALTRPGYYKHSDGGIGHSWMTSSEVPKRKQLINPLVTSTRVSSCSVSITQVLPR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0665 380 Gene3D Transferase(Phosphotransferase) domain 1 123 329 - -
Vvi6g0665 380 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Vvi6g0665 380 CDD STKc_IRAK 53 319 - -
Vvi6g0665 380 SUPERFAMILY Protein kinase-like (PK-like) 29 317 IPR011009 -
Vvi6g0665 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vvi6g0665 380 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vvi6g0665 380 FunFam cold-responsive protein kinase 1 18 122 - -
Vvi6g0665 380 ProSiteProfiles Protein kinase domain profile. 47 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0665 380 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
Vvi6g0665 380 SMART serkin_6 47 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0665 380 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
Vvi6g0665 380 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0665 Vvi-Chr6 7167127 7169404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0665 35 317 Receptor kinase-like Gene Family AT1G53420 54.930 2.17e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi6g0665 PK_Tyr_Ser-Thr 6.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0665 - - vvi:100241635 724.161