Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0652 ATGGCGGTGAAGCTTTCCAGGGCAGAGAAGAAGGTCCAGTATGACCAGAAGCTGTGCCGTCTTCTTGACGAGTATTCCCAGATCCTCATTGTCGCAGGGTTGAGAGATCAGAGTATCCGAGAAAATGGGAAGAAGCTACCTGGTTTTGGAGAACTGATAAAACATAAGATTCAACATCTTCATTTGCTTCCTTTTTTTCCTCTTTTCAGGTCCTATGGAAACGTTGGGCTGATATTCACAAAGGGAGATTTGAAGGGAGTGAGTGACGAGGTTGCCAAGTACAAGGTGGGAGCTCCTGCTCGCGCTGGCGTTGTTGCTCCTATTGATGTTGTTATTCAACCTGGAAGCACAGGACTGGATCCTGCTCTCACTTCCTTCTTTCAGGTGCTTAACATCCCAACCAAGATCAACAAGGGTGCAGTGGAGATAGTTGTCCCTGTGCAGCTTGTTAAGAAGGGTGACAAAGTGGGTTCATCTGAAGCTGCCCTTCTTGCAAAGTTGGGGAAGAAGTCATTCTCTTATGGTCTTGTTGTCTTGTCTGTTTCCGACAATGGGTCGGTCTTCAGCCCTAAGGTGCTTGATCTCACAGATGATGATTTGGCGGAGAAGTTTTCTGCTGGGGTCTCTATGAAAGCCTCTCTATCACTGGCCATCTCATACCCTACACTTGCTGCTGCACTCCATATGTTCATTAACGCCTGCAACAATGTCCTCACTGTTGCGGTAGTTGCAGAGTATTCCTTCCCACAGGCTCAGCAAGTGAAGGAATACCTAAAGGATCCAAGCAAGTTTGCGGTTGTTGTGGCCCCAGTTGCAGCTGCTGATTCTGGTGCTGCCCCGGCTGAGGCTGCCAAGGAGGAAGAATCAGTTGAGTCGTGCGATGAGGGATACTGTAATTTGGGTTTGTTTGATTCAGCTTACTAG 924 0.4805 MAVKLSRAEKKVQYDQKLCRLLDEYSQILIVAGLRDQSIRENGKKLPGFGELIKHKIQHLHLLPFFPLFRSYGNVGLIFTKGDLKGVSDEVAKYKVGAPARAGVVAPIDVVIQPGSTGLDPALTSFFQVLNIPTKINKGAVEIVVPVQLVKKGDKVGSSEAALLAKLGKKSFSYGLVVLSVSDNGSVFSPKVLDLTDDDLAEKFSAGVSMKASLSLAISYPTLAAALHMFINACNNVLTVAVVAEYSFPQAQQVKEYLKDPSKFAVVVAPVAAADSGAAPAEAAKEEESVESCDEGYCNLGLFDSAY* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0652 307 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 5 288 - -
Vvi6g0652 307 Gene3D - 6 195 IPR043141 -
Vvi6g0652 307 Pfam 60s Acidic ribosomal protein 220 303 - -
Vvi6g0652 307 FunFam 60S acidic ribosomal protein P0 99 172 - -
Vvi6g0652 307 Pfam Insertion domain in 60S ribosomal protein L10P 100 168 IPR040637 -
Vvi6g0652 307 Gene3D - 100 171 IPR043164 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0652 Vvi-Chr6 7093095 7104132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0652 1 278 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 65.306 4.28e-126 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0652 K02941 - vvi:100250225 465.692